Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3409 ATGAACCATTTTTGTGCAAATTCCAAGAGCTTATTGTTGCAAACTCTTAATGGTTTTCTTCTGTTATGCATGATCTCAAGCTTGCACTTGGTAACAACAGCAACATCAGAAGAAAATGAAACTGATCTCAATCCATTCAACATTATGAGTTCTTGGAATAACTCCTTCCACCACTGCAATTGGACAGGAATCACCTGCAACATTTCCAATGGAAGGGTCATGAACATGAACCTTGCAAAACTGAGATTAAAAGGTACTCTTTCACCATCCATAGGAAACCTCACATTTCTCACCACACTGAACCTGTTGAACAATAGCTTCCATGGTGAAATTCCTCAAGAGTTGGGGCGTTTACACTACGTGCAAACTCTGGAATTCGCCTTCAATGACTTTGGTGGAAACATTCCAAATAATCTCAGCCACTGTACACAACTGTTATCACTTGGTTTTGGTGCTAACAATCTCACAGGAACAATCCCAAATTGGATAGGAAACATTTCTTCTCTGACTCGTCTTAGTTTTGCCTTGAACAATTTTCATGGAAGCATACCACATGAGGTTGGTCTTTTATCAAGTTTAACACAACTTCTACTATATGGGAATTTTTTGTCTGGCACAGTTCCTTCTTCAATCTATAATCTTTCTTCCTTGTTTTATTTCACTCTCACTCAAAACAATCTCCATGGAAGTTTACCATCTGATGTGGGATTTACTCTTCCTAACCTTGAAGTGTTTGCTGGTGGAGTCAACAATTTCACAGGGAATGTTCCTGCATCATTGTTAAATGCTTCAAAACTAGTAGTTCTTGACTTTTCTGTTAATGCCCTCACTGGATCACTGCCTAAGAACATAGGGGCCTTGAACCGGTTAACTAGACTTAGTTTTGAGCATAATAGGCTTGGAACTGGTAAAGCAGGAGATCTTAATTTTCTTGATTCTTTGGTCAATTGCACATCTCTACAGGTTCTACGCCTCGGAACGAATCGCTTTGGTGGAGTGTTGCCTGATTCAATTGCTAATTTCTCAACCCAATTGTACACATTTGCCTTTGGTTCCAATGAAATACGAGGAAATATACCTGCTGGGATTAGCAATCTTGTTAACTTGACCCTTTTATCATTGGAAGGAAACCACTTAATTGGTAGTGTTCCTGATGCAATAGGCAAGCTGCAAAATCTGCAAGAGTTGTATCTCAATGTCAACAACTTTTCAGGAAGAATCCCATCCTCTTTAGGAAATTTGTCTTCAATAAATAAACTCTTTCTGGAGGAGAACAACTTTGAAGGAAGCATACCTTCAAGTCTTGGAAAGTGCAAGGAGTTATTGGTGTTTAGCCTTTATCGTAACAAGCTTAGAGGCACAATACCAAAAGAAGTTTTTAGCCTTTCTTCACTATCAATATATTTGGATGTGTCTTACAATGCTTTGTCAGGGACACTGCCTGTTGAAGTGGGTAAGCTGCAAAACCTTGGAGAGTTGGTGCTGTCTGGTAACAACTTCTCAGGAGTCATTCCATCTTCTCTTGGCAGCTGCATTAGCTTGGAAAAGCTGCGTTTGCAGGGTAACTCTTTCCAGGGAAACATTCCTCAAAGTTTGAAGGATTTGAGAGGTTTACTTGATATAGATCTTTCGCGCAATAACCTGTCTGGTAAGATTCCTGAGTTTCTTGGTGAGTTCACACAACTCAAGCGCCTTAATCTTGCTAACAACAGTTTTGAAGGTGAAATACCAATGAATGGAATCTTCAAGAATGTAACTTCCATTTCATTATATGGAAACAGCAAGCTCTGTGGTGGTGTCCCACAATTGAATTTTCCTTCATGCACTGTGAGGAAAACCTCTTCCTTAAGAAAACTTCTTTCCCCTAAGGTGGCTATCCCTATAGGTATTGCACTTGTTCTTGTCCTCTTGATGTCATGTTTTCTTACAATCTTCCTCATTGTGAAAAGAGAAAAAAAGAGAACTTCATTATCAACTACCTCCTTGGAATTGGGATTTTCTTACTCAGAAATTGCAAATTGCACTGGTGGGTTCTCCCAGGATAACTTGGTTGGCTCAGGAAGTTTTGGTTCTGTATATAAAGGAACTCTTTCAGGTGATGGACCAATTGTTGCAGTGAAAGTGTTGAATCTTCAACAAAGAGGGGCTTCGAGAAGCTTCATTGATGAATGCCATGTTCTGAGGAATACAAGGCACCGCAACCTTCTCAAGATCATAACTGCCATCTCAAGTGTTGATCAACAAGGTAATGAGTTCAAGGCTCTAGTCTTTGAGTTCATGTCTAATGGAAGTCTAGAAGATTGGTTGCATCCAATTAGTAACCTTCAATCTCAAACCAAGACATTGAAATTTATCCAGAGACTGAACATTGCAATTGATGTTGCTTGTGCCCTGGAATATCTCCACCACTCGGGTGAAACACGAATTGTTCATTGTGATATAAAGCCAAGCAATGTTCTTCTTGACAATGATTTGGTAGCCCATGTTGGTGACTTTGGTTTAGCTACATTTCTGTTTGAAGAACCAAGCAATTTTTCCAAACAATCAATCATGTCAGCTAGCCTAAGGGGTTCTATTGGATATGTCCCTCCAGAGTATGGCATGGGTGGAAAGCCTTCTACGCTTGGAGATATCTACAGTTACGGAATACTATTACTTGAGATCTTCACAAGAAAAAGACCAACTGATGAAGCATTTGAAGGTGGCATGGGAATTCGCCAGTTTATAGCAATGGCTCTACCTAACAATGTCATGGATGTAATTGATCCTTCATTTATCTGTGAAGATGAATTTGATGATGAAAGTGAAGAATTTGAAGAAAATGAAGAAGAAGAAAGAGCTATTAGGGGAAACTATGAGATTGAAGTCCATGGTAAAGGTTTGTTGGAGGCTTGCATTGTATCAGTGATGGAAATTGGAGTGTCTTGCTCAGCAACTGCTCCAAGTGAACGGATGCCAATCACTGCAGTGGTTAAAAAACTGCATGCTATCAAGAACTCACTTATAAAGAAGAAGGATAAAGTATAA 3027 0.3944 MNHFCANSKSLLLQTLNGFLLLCMISSLHLVTTATSEENETDLNPFNIMSSWNNSFHHCNWTGITCNISNGRVMNMNLAKLRLKGTLSPSIGNLTFLTTLNLLNNSFHGEIPQELGRLHYVQTLEFAFNDFGGNIPNNLSHCTQLLSLGFGANNLTGTIPNWIGNISSLTRLSFALNNFHGSIPHEVGLLSSLTQLLLYGNFLSGTVPSSIYNLSSLFYFTLTQNNLHGSLPSDVGFTLPNLEVFAGGVNNFTGNVPASLLNASKLVVLDFSVNALTGSLPKNIGALNRLTRLSFEHNRLGTGKAGDLNFLDSLVNCTSLQVLRLGTNRFGGVLPDSIANFSTQLYTFAFGSNEIRGNIPAGISNLVNLTLLSLEGNHLIGSVPDAIGKLQNLQELYLNVNNFSGRIPSSLGNLSSINKLFLEENNFEGSIPSSLGKCKELLVFSLYRNKLRGTIPKEVFSLSSLSIYLDVSYNALSGTLPVEVGKLQNLGELVLSGNNFSGVIPSSLGSCISLEKLRLQGNSFQGNIPQSLKDLRGLLDIDLSRNNLSGKIPEFLGEFTQLKRLNLANNSFEGEIPMNGIFKNVTSISLYGNSKLCGGVPQLNFPSCTVRKTSSLRKLLSPKVAIPIGIALVLVLLMSCFLTIFLIVKREKKRTSLSTTSLELGFSYSEIANCTGGFSQDNLVGSGSFGSVYKGTLSGDGPIVAVKVLNLQQRGASRSFIDECHVLRNTRHRNLLKIITAISSVDQQGNEFKALVFEFMSNGSLEDWLHPISNLQSQTKTLKFIQRLNIAIDVACALEYLHHSGETRIVHCDIKPSNVLLDNDLVAHVGDFGLATFLFEEPSNFSKQSIMSASLRGSIGYVPPEYGMGGKPSTLGDIYSYGILLLEIFTRKRPTDEAFEGGMGIRQFIAMALPNNVMDVIDPSFICEDEFDDESEEFEENEEEERAIRGNYEIEVHGKGLLEACIVSVMEIGVSCSATAPSERMPITAVVKKLHAIKNSLIKKKDKV* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3409 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Lja1g3409 1008 SUPERFAMILY L domain-like 39 300 - -
Lja1g3409 1008 Gene3D Transferase(Phosphotransferase) domain 1 760 1007 - -
Lja1g3409 1008 Gene3D Phosphorylase Kinase; domain 1 660 759 - -
Lja1g3409 1008 Pfam Leucine rich repeat N-terminal domain 45 67 IPR013210 -
Lja1g3409 1008 SMART LRR_typ_2 190 214 IPR003591 -
Lja1g3409 1008 SMART LRR_typ_2 487 511 IPR003591 -
Lja1g3409 1008 SMART LRR_typ_2 94 118 IPR003591 -
Lja1g3409 1008 SMART LRR_typ_2 366 389 IPR003591 -
Lja1g3409 1008 SMART LRR_typ_2 559 584 IPR003591 -
Lja1g3409 1008 SMART LRR_typ_2 390 414 IPR003591 -
Lja1g3409 1008 ProSitePatterns Protein kinases ATP-binding region signature. 684 707 IPR017441 GO:0005524
Lja1g3409 1008 Gene3D Ribonuclease Inhibitor 35 141 IPR032675 -
Lja1g3409 1008 Pfam Leucine Rich Repeat 392 414 IPR001611 GO:0005515
Lja1g3409 1008 Pfam Leucine rich repeat 513 571 IPR001611 GO:0005515
Lja1g3409 1008 SMART serkin_6 678 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3409 1008 SUPERFAMILY Protein kinase-like (PK-like) 656 994 IPR011009 -
Lja1g3409 1008 Pfam Protein kinase domain 679 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3409 1008 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 147 999 - -
Lja1g3409 1008 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 44 148 - -
Lja1g3409 1008 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 44 148 - -
Lja1g3409 1008 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 147 999 - -
Lja1g3409 1008 Gene3D Ribonuclease Inhibitor 237 306 IPR032675 -
Lja1g3409 1008 Gene3D Ribonuclease Inhibitor 142 236 IPR032675 -
Lja1g3409 1008 SUPERFAMILY L domain-like 317 598 - -
Lja1g3409 1008 Gene3D Ribonuclease Inhibitor 307 609 IPR032675 -
Lja1g3409 1008 ProSiteProfiles Protein kinase domain profile. 678 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3409 Lja-Chr1 42473048 42476555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3409 48 1003 Receptor kinase-like Gene Family AT3G47570 43.347 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lja1g3409 Pkinase 2.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3409 - - lja:Lj1g3v2312950.1 1883.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3409 1 42473048 42476555 Lja1g3409 1 42473048 42476555 ECH