Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3406 ATGATTGGCCGTTGCTTTGGTGTCTTGAATTGCTGTAAAGCGAGGGGTGAGCATGCTGACCAGCCCCATGAACACGTGACTGCAACTAGAAACTTTAGCTATAACTCACTGAGATCAGCAACTGGAGATTTTCATCCTTCATGTAAAATTGGTGGAGGAGGTTATGGAGTTGTGCACAAGGGAGTTCTAAGGGATGGTACTCAAGTTGCTATCAAGTCTCTTTCTGTCGAGTCTAAGCAAGGAGCACGTGAATTCATGACAGAAATTGATATGATCTCAAGTATACAACATCCAAATCTTGTGAAGCTAATTGGCTGCTGTGTTGAGGGTAGACATCGGATATTGGTTTATGAATTTATGAAGAACAATAGCCTTGCGAGTTCTTTGCTTGGTTCCAAAAGTAAACTTGTTGCTCTGGATTGGCCGAAGAGAGCTGCTATTTGCCGTGGTACTGCTTCTGGTCTTTGCTTTCTTCATGAAGAGGCTCAACCAAACATTGTTCACAGAGATATCAAGGCCAGCAACATATTGCTGGATGAGAACTTTACTCCAAAAATTGGGGATTTTGGCTTTGCAAAGCTTTTCCCTGACAATGTCACTCATGTTAGTACTCGTGTTGCAGGAACAGAGGGATATCTTGCACCAGAATATGCACTTCTCCGACAGCTTACAAAGAAGGCAGATGTATACAGTTTTGGAATTCTCATGCTTGAAATAATAAGCGGTAGAAGTAGCAGCAAAGCTGCATTTGGAGATAATCTCTTGGTTTTGGTGGAATGGGCTTGGAAGCTGAAAGAAGAAAATAGGTTTCTGGAGCTTGTTGATCCAGAATTAACTGAATATGATGAGAACCAGGTGAATCGGTTCCTCATAGTTGCTTTATTTTGCACCCAATCAGCAGCTAAGCATAGACCCGCCATGAAGCAAGTGTTGGAAATGCTTTCCAAGGAAGTTCATCTTAACGAGAAGGCATTGACTGAGCCTGGAGTATACAGATGGCATAACTCTGGTGGTTCTTCAAATGAGACATCATCTTCTCAGGTAATCAAGTACAAAAAATCTGATAATCCACATGAAACCTCAACCAACCTTAGTGGTACAGATATTGTGTCAGAGATGATTCCTAGATGA 1131 0.4191 MIGRCFGVLNCCKARGEHADQPHEHVTATRNFSYNSLRSATGDFHPSCKIGGGGYGVVHKGVLRDGTQVAIKSLSVESKQGAREFMTEIDMISSIQHPNLVKLIGCCVEGRHRILVYEFMKNNSLASSLLGSKSKLVALDWPKRAAICRGTASGLCFLHEEAQPNIVHRDIKASNILLDENFTPKIGDFGFAKLFPDNVTHVSTRVAGTEGYLAPEYALLRQLTKKADVYSFGILMLEIISGRSSSKAAFGDNLLVLVEWAWKLKEENRFLELVDPELTEYDENQVNRFLIVALFCTQSAAKHRPAMKQVLEMLSKEVHLNEKALTEPGVYRWHNSGGSSNETSSSQVIKYKKSDNPHETSTNLSGTDIVSEMIPR* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3406 376 Gene3D Phosphorylase Kinase; domain 1 15 119 - -
Lja1g3406 376 MobiDBLite consensus disorder prediction 352 376 - -
Lja1g3406 376 Pfam Protein tyrosine and serine/threonine kinase 48 314 IPR001245 GO:0004672|GO:0006468
Lja1g3406 376 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Lja1g3406 376 SUPERFAMILY Protein kinase-like (PK-like) 23 314 IPR011009 -
Lja1g3406 376 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3406 376 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
Lja1g3406 376 SMART serkin_6 44 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3406 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Lja1g3406 376 CDD STKc_IRAK 50 316 - -
Lja1g3406 376 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 358 - -
Lja1g3406 376 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3406 Lja-Chr1 42443668 42448054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3406 32 361 Receptor kinase-like Gene Family AT1G56120 50.000 4.34e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja1g3406 PK_Tyr_Ser-Thr 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3406 - - gmx:100816683 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3406 1 42443668 42448054 Lja1g3406 1 42443668 42448054 ECH