Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3401 ATGGGGCCAAGCGGCTTTCTGTGGAATTTTACTAAAAAGTTTGTCACATTTGGGCTCATATCTGTGACTGTGTCCGATCGTTACATGACTGTTGTTCCTGTTCGAGGTGGCTCTATGTCTCCCACATTCAATCCTAAAACTCACTCTTTGATGGGAGGTGTTTCTGATGACTATGTCTTTGTTGAAAAATTTTGCCTTCAGAAGTACAAGTTTTCACATGGTGATGTGGTGGTCTTTCGCTCCCCATTGAATCACAAGGAGACACACATAAAGAGAATAATTGCATTACCTGGTGAATGGATTGGCGCTCATCATAACTATGATGTGCTGAAGATTCCAGAAGGACATTGTTGGGTTGAGGGAGACAATGCAGCTTCTAGCTTGGATTCAAAATCATTTGGACCTATTCCTTTGGCTCTCATTCGAGGAAGGGTTACCCATGTCGTGTGGCCTCCACAAAGAATAGGAGCTGTCAAGAGTACTCCACCAGAAGGATTATCTCCTTCTATAGTTGGATCCTAA 522 0.431 MGPSGFLWNFTKKFVTFGLISVTVSDRYMTVVPVRGGSMSPTFNPKTHSLMGGVSDDYVFVEKFCLQKYKFSHGDVVVFRSPLNHKETHIKRIIALPGEWIGAHHNYDVLKIPEGHCWVEGDNAASSLDSKSFGPIPLALIRGRVTHVVWPPQRIGAVKSTPPEGLSPSIVGS* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3401 173 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 5 164 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Lja1g3401 173 CDD S26_SPase_I 31 145 IPR019533 GO:0004252|GO:0006465
Lja1g3401 173 Pfam Signal peptidase, peptidase S26 8 103 IPR019533 GO:0004252|GO:0006465
Lja1g3401 173 Pfam Signal peptidase, peptidase S26 111 150 IPR019533 GO:0004252|GO:0006465
Lja1g3401 173 SUPERFAMILY LexA/Signal peptidase 30 158 IPR036286 -
Lja1g3401 173 TIGRFAM sigpep_I_bact: signal peptidase I 19 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lja1g3401 173 Gene3D Umud Fragment, subunit A 27 160 - -
Lja1g3401 173 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lja1g3401 173 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lja1g3401 173 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3401 39 162 MADS-box Gene Family AT1G29960 36.154 1.39e-20 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3401 K09648 - gmx:100527429 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3401 1 42420939 42422853 Lja1g3401 1 42420939 42422853 ECH