Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3400 ATGACAAAGGGAAAGAAAGCTGGAAAGACTTCAAAGGAAGTATTGAAACCAGTTGATGACCGAAAGGTAGGAAAGCGAAAGGCGGCTGTTAAACCCGATAAGGGTACTGCAGGGAAGGCAAAGAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCGCCCAGCGCTTTCTTTGTGTTCCTTGAGGATTTCAGAAAGACTTTTAAGGCTGAAAATCCTAATGTAAAGGGTGTATCCGCTGTTGGGAAAGCTGGAGGAGAAAAATGGAAATCCTTGACTAAGGCTGAGAAAGCTCCATATGAAGCTAAGGCTGCAAAAAGGAAAGCTGAGTATGAAAAACTTATTAATGCTTATAATAATAAACAGGCAAGTACAGCGGATGATGTAGACGAGGAATCGGACAAGTCCAAATCTGAAATAAATGATGAAGAGGACGAAGCCAGTGGACAGGAGGGCCACCCGGATGAAGAGGATGATGACGAGGACGATGAAGATGATGATGATGATGAGGATGATGACTGA 522 0.4349 MTKGKKAGKTSKEVLKPVDDRKVGKRKAAVKPDKGTAGKAKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKGVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKAEYEKLINAYNNKQASTADDVDEESDKSKSEINDEEDEASGQEGHPDEEDDDEDDEDDDDDEDDD* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3400 173 CDD HMGB-UBF_HMG-box 52 113 - -
Lja1g3400 173 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 50 119 IPR009071 -
Lja1g3400 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 161 IPR031061 -
Lja1g3400 173 Coils Coil 126 146 - -
Lja1g3400 173 MobiDBLite consensus disorder prediction 1 43 - -
Lja1g3400 173 Gene3D High mobility group box domain 35 135 IPR036910 -
Lja1g3400 173 MobiDBLite consensus disorder prediction 144 173 - -
Lja1g3400 173 MobiDBLite consensus disorder prediction 118 173 - -
Lja1g3400 173 MobiDBLite consensus disorder prediction 1 55 - -
Lja1g3400 173 SUPERFAMILY HMG-box 36 119 IPR036910 -
Lja1g3400 173 MobiDBLite consensus disorder prediction 125 143 - -
Lja1g3400 173 Pfam HMG (high mobility group) box 50 119 IPR009071 -
Lja1g3400 173 SMART hmgende2 49 120 IPR009071 -
Lja1g3400 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 2 161 - -
Lja1g3400 173 Coils Coil 101 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3400 Lja-Chr1 42413867 42417466 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lja1g3400 HMG_box 2.1e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3400 K25507 - mnt:21398659 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3400 1 42413867 42417466 Lja1g3400 1 42413867 42417466 ECH