Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3399 ATGAAGGGGTTTAGTCTGCAAAGAAGGAAGAATCAACATAAAGGAATAGGAGAGATGCGCAAGACTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGACATACAGTTTGCTAATACTCTTGCTTCTGGTTATCCAAGTGATCAGGATGGTGCCTGCCTCCAGATGAGATTGTCTTACAGCCCAGCTGCTCAATTCTTCCTTTTTCTGGTTCAGTGGACTGATTGCCACCTTGCCGGAGCCTTGGGATTGCTTAGAATTCTTATATACAAGGCATATCAGGATGGGAAGACAACCATGTCCATTTACGAAAGAAAAGCCAGTCTGAAGGAGTTCTATAGTGTGGTCTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACAGATGTTGAAGAGAGGAAACAGAAACATCTATGTGCTACTAGGTACAAGTGTAAAGATTTAACAAGCAAAGGAAAGCTCTCTGAAATCGACATAGAGAGAGAAGAAGAGTGTGGTATTTGCATGGAGATAAACAGCAAGGTTGTATTGCCCAACTGCAATCACTCAATGTGTATGAAATGCTACCGAGACTGGCATGCAAGATCTCAATCTTGCCCTTTCTGCCGGGACAGTCTTAAAAGAGTAAACTCTGGTGACCTTTGGATATACATGAGGAGCAGTGAGATAGATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGGCTATTTATGTACACAGAAAAATTGCCTCTCGTAGCAAGACCTTATATTCATGTCAGATCGTCACAATTGGTGATTGCCACCTAG 789 0.4195 MKGFSLQRRKNQHKGIGEMRKTFKDSLKALEADIQFANTLASGYPSDQDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYQDGKTTMSIYERKASLKEFYSVVFPSLLQLHRGITDVEERKQKHLCATRYKCKDLTSKGKLSEIDIEREEECGICMEINSKVVLPNCNHSMCMKCYRDWHARSQSCPFCRDSLKRVNSGDLWIYMRSSEIDDLASINKENLKRLFMYTEKLPLVARPYIHVRSSQLVIAT* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3399 262 SUPERFAMILY RING/U-box 153 207 - -
Lja1g3399 262 SMART ring_2 164 201 IPR001841 -
Lja1g3399 262 Pfam Zinc finger, C3HC4 type (RING finger) 161 207 - -
Lja1g3399 262 ProSitePatterns Zinc finger RING-type signature. 179 188 IPR017907 -
Lja1g3399 262 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 10 261 - -
Lja1g3399 262 PANTHER RING FINGER PROTEIN 41, 151 10 261 - -
Lja1g3399 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 211 IPR013083 -
Lja1g3399 262 ProSiteProfiles Zinc finger RING-type profile. 164 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3399 Lja-Chr1 42403846 42412733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3399 108 209 C3H Transcription Factor Family AT5G01960 27.103 8.76e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3399 K25840 - gmx:100814293 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3399 1 42403846 42412733 Lja1g3399 1 42403846 42412733 ECH
Lja1g3399 1 42403846 42412733 Lja3g3308 3 65162910 65166005 PCT