Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3397 ATGGCAGGTCCAGAGCTTACAAATGGGAAAACCTCATTGAGCTTCTTCAAGCCTAGTCATGAAACTAGAGGAAAAACCATTACTTGCAAAGCCGCTGTGGCATATGGTCCTGGAGATCCATTCGTAGTGGAACAAGTTCTTGTTCATCCACCTCAGAAAATGGAGGTTCGGATCAAGATCCTCTATACCTCCATCTGCCACACTGATCTTAGCGCTTGGCAAGGCGAGAATGAGTCTCAGCGTGCTTATCCTCGGATTTTCGGCCATGAAGCATCCGGGGTTGTGGAGAGCGTTGGGGAAGGTGTGAGTGACATTAAAGAAGGTGACACAGTGGTGCCAATTTTCAATGGAGAGTGTGGTGAGTGCAAATTCTGCAAGTGTGACCAAACCAACATGTGTGAGAATTTTGGTGTAAACCCGATGAGAAAGGTGATGTTTGGAGATGGAAAAAGCAGGTTCTCTACCGTTGATGGAAAACCTATTTTCCATTTCATGAACACTTCAACGTTCGCCGATTACACAGTGGTGGACTCAGCCTGCGTCGTCAAGCTCCGCCCTGAACCCCGCCTCAGCCTCAAAAACCTCACCTTGCTCAGCTGCGGAGTTTCCACAGGAATTGGAGGTGCTTGGAATACTGCTAATGTACAGGCCGGTTCATCTGTGGCAATCTTTGGTTTAGGTGCTGTTGGTCTCGCTGTTGCAGAAGGAGCACGAGCCAGAGGTGCATCAAAAATAATAGGTGTGGACATAAACCCAGAGAAATTCATCAGAGCTCAAGAAATGGGAATCACTGACTTCATAAATCCAAGGGATGAAGAGAAGCCAGTACATGAGATAATCAGCGAAATGACTGAAGGAGGTGTACACTACAGTTTTGAATGTACAGGAAACTTGGATGTTCTAAGGGAATCATTCTTGTCTACTCATGAGGGTTGGGGATTGACTGTAATGTTGGGAATTCATGCATCACCAAAGTTGCTCCCGTTCCACCCAATGGAGTTCTTCAATGGTCGCAGAATTGTTGGATCAGTCTTTGGAGATTTCAAAGGGAAAAGTCAATTGCCTCATCTCGCCACGGAATGCATACATAAAGATGTGAAGCTGGAAAATTTCATTACTCATGAGCTACCCTTCGAGGAGATAAACAAAGCCTTCGACCTTTTGATCACTGGGAAGTCACTGAGATGTCTTCTGCACCTTTAA 1203 0.4589 MAGPELTNGKTSLSFFKPSHETRGKTITCKAAVAYGPGDPFVVEQVLVHPPQKMEVRIKILYTSICHTDLSAWQGENESQRAYPRIFGHEASGVVESVGEGVSDIKEGDTVVPIFNGECGECKFCKCDQTNMCENFGVNPMRKVMFGDGKSRFSTVDGKPIFHFMNTSTFADYTVVDSACVVKLRPEPRLSLKNLTLLSCGVSTGIGGAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFIRAQEMGITDFINPRDEEKPVHEIISEMTEGGVHYSFECTGNLDVLRESFLSTHEGWGLTVMLGIHASPKLLPFHPMEFFNGRRIVGSVFGDFKGKSQLPHLATECIHKDVKLENFITHELPFEEINKAFDLLITGKSLRCLLHL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3397 400 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 19 399 - -
Lja1g3397 400 PANTHER ALCOHOL DEHYDROGENASE 19 399 - -
Lja1g3397 400 Pfam Zinc-binding dehydrogenase 228 347 IPR013149 -
Lja1g3397 400 Pfam Alcohol dehydrogenase GroES-like domain 55 183 IPR013154 -
Lja1g3397 400 SUPERFAMILY GroES-like 349 399 IPR011032 -
Lja1g3397 400 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 88 102 IPR002328 GO:0008270|GO:0016491
Lja1g3397 400 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 190 359 IPR036291 -
Lja1g3397 400 SUPERFAMILY GroES-like 22 224 IPR011032 -
Lja1g3397 400 Gene3D - 32 395 - -
Lja1g3397 400 Gene3D - 205 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3397 Lja-Chr1 42352327 42363983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3397 55 389 Monolignol Biosynthesis Gene Families AT2G21890 25.862 6.68e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3397 K00001 - gmx:100819896 610.912