Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3395 ATGGCTTCTTCTCATTCTCATCAACAAGAGCCATGGCTGATGGAGAATGGCAACGTGAAAGTGCTGACCAAGGAGATGAGGCATGGCCGCACCGCGCACAGCATGTCATCATCTTCCCTGCGGAAGAAGTCTAATCTCACCCTCGTGTCGAAGGTCCGGTGCGGGTTGCTCAGAAACCTCTTGGCTAATCTCCAAGAGGTTATTCTGGGCACCAAGCTCTCCATTCTCTTCCCTTTCATTCCCGCTGCCATTTTTGCTGAGTGCTATGGCTTGGGCAGATCCTGGGTTTTTGTATTGAGCTTACTTGCACTGACCCCACTAGCTGAACGTGTCAGCTTCCTCACAGAACAAATTGCCTTTTACACAGGTCCCACAGTTGGTGGACTTCTTAATGCAACATGTGGGAATGTTACTGAGCTCATCATAGCAATATTTGCTCTTAGCAGCAACAAAATTGCTGTGGTCAAGTATTCTCTCTTGGGTTCTGTGCTTTCAAACCTACTTCTTGTCCTTGGAACCTCTCTATTCTGTGGTGGCATTGCAAACATTAGAGCAGAACAAAAATATGACAGAAGACAAGCAGATGTGAACTCACTTATGTTGCTGCTGGCTTTGTTGTGCCACTTGCTCCCAATGCTATTCAGATACAGTGCTGCCTCTGCTGCTCTAACTGTCGAGCCGTCGCTCTATTTGTCGCGAGCTTCGAGCATTGTGATGCTGGTTGCATATCTTGCTTACCTTGTCTTTCAACTGTGGACACACAGGCAATTGTTTGAAGCTGAAGATGAAGATGAAGGTGGCAACAATGAATCAGAAGAACAAGCTGTGATTGGATTCTGGAGTGGCTTTGCTTGGCTGGTTGGGATGACTGTATTCATTGCTTTGTTGTCTGAATACGTGGTCGATACAATTGAGGATGCATCAGATTCATGGGGTCTGTCTGTAAGTTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCAGAACATGCAGGAGCAATCATTTTTGCTTTCAAGAACAAGCTAGACATCTCATTGGGTGTTGCATTGGGTTCTGCAACTCAAATTGGCATGTTTGTGGTTCCCCTATGCGTGATTGTTGCTTGGATAATGGGTGTGAATATGGACTTGAACTTCAACCTTCTAGAGACAGGTTCTCTTGCTGTGGCAATAATAGTCACAGCCTTCACATTACAGGATGGAACCTCTCACTACATCAAAGGCCTTATTCTTCTCCTTTGCTACATTGTTATTGGGGCTTGCTTCTTCGTACAAAGATTACCCTCCGACCAAATTAATGCTAACAACATAATGCTCAAATCAGTCCCTAATGCAGCTTTAAGCGCCTAG 1356 0.4543 MASSHSHQQEPWLMENGNVKVLTKEMRHGRTAHSMSSSSLRKKSNLTLVSKVRCGLLRNLLANLQEVILGTKLSILFPFIPAAIFAECYGLGRSWVFVLSLLALTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNVTELIIAIFALSSNKIAVVKYSLLGSVLSNLLLVLGTSLFCGGIANIRAEQKYDRRQADVNSLMLLLALLCHLLPMLFRYSAASAALTVEPSLYLSRASSIVMLVAYLAYLVFQLWTHRQLFEAEDEDEGGNNESEEQAVIGFWSGFAWLVGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIGMFVVPLCVIVAWIMGVNMDLNFNLLETGSLAVAIIVTAFTLQDGTSHYIKGLILLLCYIVIGACFFVQRLPSDQINANNIMLKSVPNAALSA* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3395 451 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 4 438 IPR004713 GO:0006812|GO:0008324|GO:0016021
Lja1g3395 451 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 4 438 - -
Lja1g3395 451 TIGRFAM cax: calcium/proton exchanger 78 425 IPR004798 GO:0006816|GO:0015369
Lja1g3395 451 Pfam Sodium/calcium exchanger protein 282 420 IPR004837 GO:0016021|GO:0055085
Lja1g3395 451 Pfam Sodium/calcium exchanger protein 95 252 IPR004837 GO:0016021|GO:0055085
Lja1g3395 451 Gene3D - 268 425 IPR044880 -
Lja1g3395 451 Gene3D - 124 265 IPR044880 -
Lja1g3395 451 TIGRFAM caca2: calcium/proton exchanger 59 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3395 Lja-Chr1 42338693 42343577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3395 10 434 Antiporters AT2G38170 71.659 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3395 K07300 - gmx:100779440 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3395 1 42338693 42343577 Lja1g3395 1 42338693 42343577 ECH