Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3391 ATGATTGTCTTGCACAATGCACTTGGTGGACAAGATACAGATAAATTCCCTTTTTCATTTCTTGACCGGCATGGAAAATATGTGCAAACTTTCTTGACTGCAAATAAGAGGGTTAACATAGATGGTCAGATCATTGGGGCTTTTTGCTTTTTGCAAATTGCTACAGGCTTGACTGAGGAGCAAAAACAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTAAAGATAACACGGGACATTGATCTGGAAAGTATCGAGGATGGGTCCCTGGAGCTTGAAAGGGGAGAATTCTTGCTTGGGAATGTCATAAATGAAGTAGTTAGTCAAGTAATGGTCTTGCTAAGAGAAAGAATTCTACAGTTGATTCGCGATATTCCTGAAGAAATCAAAATATTGGCCGTTTATGGTGATCAGTTGGGGATTCAAGTTCAACAAGTATTGGCTGATTTCTTATCAAATGTTGTGCGGTATGCACCATCTCCAGATGGCTGGGTAGAGATTCATGTATACCAAAAATTAAAGCAAATTTCAGACGGGCTCACCCTTCTCCATGCTGAATTTAGGTTGGTATGCCCTGGTGAAGATCTTCCTCCTGAATTGATTCAAGACATGTTTCATAACAGTCGGTGGGCGACTCAAGAAGGCTTAGGGCTATGCATGAGCAGGAAGATTCTGAAGTTAATGAACGGCGAGGTCCAATACAGATAA 714 0.4104 MIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNIDGQIIGAFCFLQIATGLTEEQKQFLETSAACEKQMLKITRDIDLESIEDGSLELERGEFLLGNVINEVVSQVMVLLRERILQLIRDIPEEIKILAVYGDQLGIQVQQVLADFLSNVVRYAPSPDGWVEIHVYQKLKQISDGLTLLHAEFRLVCPGEDLPPELIQDMFHNSRWATQEGLGLCMSRKILKLMNGEVQYR* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3391 237 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 143 236 IPR003594 -
Lja1g3391 237 PANTHER PHYTOCHROME B-RELATED 55 236 - -
Lja1g3391 237 PANTHER TWO-COMPONENT HISTIDINE KINASE 55 236 - -
Lja1g3391 237 ProSiteProfiles Histidine kinase domain profile. 39 237 IPR005467 -
Lja1g3391 237 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 101 236 IPR036890 -
Lja1g3391 237 PANTHER PHYTOCHROME B-RELATED 1 55 - -
Lja1g3391 237 Gene3D - 70 237 IPR036890 -
Lja1g3391 237 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3391 Lja-Chr1 42281457 42284722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3391 1 236 Histidine Kinase Gene Family AT4G16250 53.169 6.73e-93 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3391 K12121 - gmx:100799831 392.889