Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3387 ATGAGCAGTGACCGCACACGAACGAAGAGGAGAAGAGAAGAGAAAACAGGAGAAGGAGAAGAAGAAGCCATGGGTGTGGACTACTACAAGATTCTTCAGGTTGATAGAGGAGCCAGCGATGATGATCTCAAGAAAGCGTATCGAAAGCTTGCTATGAAGTGGCACCCTGATAAGAACCCTAACAATAAGAAAGAGGCTGAAGCTAAATTCAAGCAAATCTCTGAGGCCTATGATGTTTTGAGTGATCCACAAAAGCGGGCAGTGTATGATCAATATGGTGAGGAGGGGTTGAAGGGGCAGGTGCCGCCGCCTGGTGCCGGTGGTTTTCCCGGTGGCAGCAATGGTGGGTCAGCGTCTTTCCGGTTCAATCCGAGAAGCGCAGATGATATATTTTCAGAATTTTTTGGGTTTTCAAGCCCCTTTGGTGGAATGGGGGACATGGGTGGCCGTGCTGGTGCCTCTGGATTTTCCAGGAGTGGCATGTTTGGTGATGATATCTTTACTCAATTTAGGAATGCAACAACTGGTGAGGGCCCTAGCCATGCGCCGAGGAAAGGTGCGCCCATTGAAAGAACATTGCATTGTAGTTTGGAGGATTTGTATAAAGGGACTACCAAGAAAATGAAGATTTCAAGGGATGTTACTGACTCCAGTGGGAGGCCAACCAGTGTAGAGGAAATACTTACAATTGAGATCAAGCCAGGTTGGAAGAAGGGGACAAAAATAACTTTTCCTGAAAAGGGAAATGAACAGAGAGGAGTTATCCCTGCAGACCTTGTCTTTATCATTGATGAGAAGGCTCATAGCGTCTTCAAGAGGGATGGCAATGATCTTATCTTCACCCAGAAGATATCTCTGGTAGAAGCGCTGACAGGATACACGGCGCAGGTTACAACCCTTGATGGGCGAAGTCTTACCATCCCGGTTAATTCCATCATCAGTCCGACATACGAGGAAGTTGTGAAAGGAGAGGGTATGCCCATTCCCAAAGAGCCTTCCAAGAAAGGGAACTTGAGAATTAAGTTCAATATCAAGTTTCCCTCCAGGCTTACATCAGAACAAAAAAGTGGTGTTAAGCGATTATTGTCATCTCCATAA 1098 0.4636 MSSDRTRTKRRREEKTGEGEEEAMGVDYYKILQVDRGASDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPGAGGFPGGSNGGSASFRFNPRSADDIFSEFFGFSSPFGGMGDMGGRAGASGFSRSGMFGDDIFTQFRNATTGEGPSHAPRKGAPIERTLHCSLEDLYKGTTKKMKISRDVTDSSGRPTSVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKAHSVFKRDGNDLIFTQKISLVEALTGYTAQVTTLDGRSLTIPVNSIISPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKSGVKRLLSSP* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3387 365 PRINTS DnaJ domain signature 85 104 IPR001623 -
Lja1g3387 365 PRINTS DnaJ domain signature 65 85 IPR001623 -
Lja1g3387 365 PRINTS DnaJ domain signature 47 62 IPR001623 -
Lja1g3387 365 PRINTS DnaJ domain signature 29 47 IPR001623 -
Lja1g3387 365 SUPERFAMILY Chaperone J-domain 26 120 IPR036869 -
Lja1g3387 365 Pfam DnaJ domain 27 90 IPR001623 -
Lja1g3387 365 PANTHER BNAANNG28460D PROTEIN 24 364 - -
Lja1g3387 365 SMART dnaj_3 26 85 IPR001623 -
Lja1g3387 365 MobiDBLite consensus disorder prediction 95 121 - -
Lja1g3387 365 MobiDBLite consensus disorder prediction 1 23 - -
Lja1g3387 365 CDD DnaJ 27 82 IPR001623 -
Lja1g3387 365 Pfam DnaJ C terminal domain 189 347 IPR002939 -
Lja1g3387 365 Gene3D - 188 267 - -
Lja1g3387 365 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 268 IPR008971 GO:0006457|GO:0051082
Lja1g3387 365 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 24 364 - -
Lja1g3387 365 Gene3D - 268 348 - -
Lja1g3387 365 CDD DnaJ_C 187 350 - -
Lja1g3387 365 Gene3D DnaJ domain 25 149 IPR036869 -
Lja1g3387 365 SUPERFAMILY HSP40/DnaJ peptide-binding domain 270 356 IPR008971 GO:0006457|GO:0051082
Lja1g3387 365 ProSitePatterns Nt-dnaJ domain signature. 70 89 IPR018253 -
Lja1g3387 365 ProSiteProfiles dnaJ domain profile. 27 93 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3387 Lja-Chr1 42174839 42178497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3387 28 92 C2H2 Transcription Factor Family AT1G74250 39.130 4.48e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3387 K09510 - sind:105161538 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3387 1 42174839 42178497 Lja1g3387 1 42174839 42178497 ECH
Lja1g3387 1 42174839 42178497 Lja3g3319 3 65365688 65369355 PCT