Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g3386 | ATGGAAATGGCTTCCAGTCCCCGCACCGTCGAAGAGATCTTCAAGGATTTCAGTGCTAGAAAAACCGCTATTGTTCGCGCTCTCACTCAAGATGTTGATGATTTTTACGGGCTCTGTGATCCAGAAAAGGATAACTTGTGTCTTTATGGACATCCAAATGAAAGCTGGGAAGTAACGCTGCCAGCGGAGGAAGTTCCGCCAGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAATCGCAGGGATTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTCAGTCTGATCAATGACTTTCCCACCGTGTTTGAAGTTGTGACTGACAGGAAACCAGCTAAAGACAAGCCAGCCACGGATAGTGGAAGCAAATCCAGAGGAAGCACCAAGAGATCTAGTGATGGGCAAGTTAAGAGCAACCCTAAGTTTGCAGAGGAGGGTTATGAGGAGGAGGATGATGAGCACAGTGAAACCCTTTGCGGGAGCTGCGGTGGAAACTACAATGCCGACGAGTTTTGGATTGGGTGCGACATATGCGAGAGGTGGTACCATGGGAAGTGTGTGAAGATTACACCTGCAAAGGCTGAGAGCATAAAGCAATATAAGTGCCCATCATGCAGCATGAGGAGGGGCAGGCCCTAG | 720 | 0.4875 | MEMASSPRTVEEIFKDFSARKTAIVRALTQDVDDFYGLCDPEKDNLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDFPTVFEVVTDRKPAKDKPATDSGSKSRGSTKRSSDGQVKSNPKFAEEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMRRGRP* | 240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g3386 | 239 | MobiDBLite | consensus disorder prediction | 148 | 165 | - | - | |
| Lja1g3386 | 239 | SMART | PHD_3 | 185 | 233 | IPR001965 | - | |
| Lja1g3386 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 183 | 233 | IPR013083 | - | |
| Lja1g3386 | 239 | SUPERFAMILY | FYVE/PHD zinc finger | 174 | 237 | IPR011011 | - | |
| Lja1g3386 | 239 | PANTHER | ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED | 3 | 238 | - | - | |
| Lja1g3386 | 239 | Pfam | Alfin | 9 | 134 | IPR021998 | GO:0006355|GO:0042393 | |
| Lja1g3386 | 239 | MobiDBLite | consensus disorder prediction | 137 | 177 | - | - | |
| Lja1g3386 | 239 | PANTHER | CPG BINDING PROTEIN | 3 | 238 | IPR045104 | GO:0006355|GO:0042393 | |
| Lja1g3386 | 239 | CDD | PHD_AL_plant | 185 | 235 | IPR044104 | - | |
| Lja1g3386 | 239 | Pfam | PHD-finger | 186 | 233 | IPR019787 | - | |
| Lja1g3386 | 239 | ProSiteProfiles | Zinc finger PHD-type profile. | 183 | 235 | IPR019787 | - | |
| Lja1g3386 | 239 | ProSitePatterns | Zinc finger PHD-type signature. | 186 | 232 | IPR019786 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g3386 | Lja-Chr1 | 42165205 | 42170788 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja1g3386 | 4 | 238 | Alfin-like Transcription Factor Family | AT5G05610 | 77.966 | 4.95e-121 | 342 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | Alfin-like | Lja1g3386 | Alfin | 2.9e-67 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja1g3386 | - | - | gmx:100779170 | 450.284 |
Event-related genes