Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3385 ATGTCAAAAGCCACTTGCAGGTTCCTCCTCTCTCTCTCTTTAATTTTTTTTCAAAAATACAGGATCTCAAAATTGATTCCAGAATCCACCACAAGAGGAAAGATTGAGAAGAAAAGCATATCAGATATACTGCCAAATTTTAGTTCTATATCTGCCCTTCAGCTAAAGGAAGTTCTTCAATTGCAGACAGAGGCGCATAAACGCTTGAATGATAAAGTCGAGAGAAGCTTGAAGCTAAAAATTGAAGCACAAGGAAGATACTTTGAGAGAATTAGCAAAAGCTATCACAGTCGAACAATAATGGGAAAATCTTGCAAGCCTTTTGTTGTTAAAGCTGCACCTCTACCTTCTCTTTCTGAGGAATCTGAATCCTTGGAAACAGAGGAAGAACATGGATCAGGAAAAAAACAAAAGGCTATAGAGGAGGGTGTTTTTCCATCAAGCTTTGATCTTGTATCATCCACCACTTCAGAACTCTACAATCAAACTTGGAATCTCTCTTGGAGCCAACTTGCTACACAAGTGTGCCAATCACCTTTGGTGCCTGGTTTCTTGTTATGA 561 0.3886 MSKATCRFLLSLSLIFFQKYRISKLIPESTTRGKIEKKSISDILPNFSSISALQLKEVLQLQTEAHKRLNDKVERSLKLKIEAQGRYFERISKSYHSRTIMGKSCKPFVVKAAPLPSLSEESESLETEEEHGSGKKQKAIEEGVFPSSFDLVSSTTSELYNQTWNLSWSQLATQVCQSPLVPGFLL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3385 186 Pfam MYB-CC type transfactor, LHEQLE motif 54 91 IPR025756 -
Lja1g3385 186 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 16 149 IPR044848 GO:0003700
Lja1g3385 186 PANTHER OS05G0491500 PROTEIN 16 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3385 Lja-Chr1 42160178 42162681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3385 16 122 G2-like Transcription Factor Family AT2G01060 35.714 5.33e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3385 - - gmx:100527384 213.386