Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3379 ATGAGGAACATAAACCAATATCTTCTATTCATCGTGATCACTACACTGGTGGCCCTATCATCAGTGTTAGGTGCTGCTCTCAAACGCTGTCCAGATTGTGGTAAAACTCAGGTCCCATACCCGCTGAGCACCGCACCAAACTGCGGCGACCCATCCTACAAGATTCGCTGCACCGGAGGCATGCTCTTCTTGGACTCCATCAGCGGTTCCGCTTACGCGATTACCGCCATCAACCCTTCGTCACAACGACTGATCATTCTCCCACCGGGCCTCGCCAGCAGCAGCATGTGCGTGTCCACCGATTTCCAAAACGGAGGGATGTGGATTGACAGCAACTCACCCTTCAACATCACCTCAAGCAACACGGAAATTCGCCTCAACTGTTCCAAGGAAGTCTTCACCGAAACTGCGTGGAACTGCTCCTCGTCGAGCATTTGCCACAAGTACCTTAAGGAAAATGCCGCGGCGGCGAAGGCGTGTGGGGGCTTGATATGTTGCGATCTGAAGACTGGTGGGTCTTCCACTGCTTATAGGTTGAGGGTCAGGAAAGAGCGTTGTTCTGCGTATGCAAGTTTTCCCAATTTCGATCCTTCTTTGCCTGTGAGTATGTGGCGGCCGGGGGTGGAGATTGAGTGGCAGTTGCCGGAGGAGCCGCCATGCAGAGTAGTTGGGGACTGCTTGGGTTTGGCAAACTCCGATTGTTTGCCGGCTGCCGGAGGAGGAAGGAAGTGCTTGTGCAAGTATGGCTTCTTGTGGGATCCTGTAAATGTAATATGTCAAAATGCCAATTCCTGTCAGCATGGAAGATGCCAGCACCGTAGGAAGAAAACTCCCCTCATTGGAGGTTTAGCATTGGCTGGGGCCACCATGCTAATAGGCTCTTTGATTATGGCATTGGTCTTTTACCTTAAGAGGCGAAGGATGAAAAGAGAAACCCAAGAAAGCATAAACAAGGCCCGCAACATATTGAATACAGACAACTCTAGTGGCAAATCCGCAAAAATCTTCACCATGAAAGAGATCATAAAGGCGACCAACAACTTCTCCGATGATAACCTCCTAGGTGCTGGTGGCTTCGGCGAGGTCTTCAAAGCAACGCTTGATGATGGAACCATTACCGCCATCAAGAGACCCAAGCTTGGCAATACCAGAGGCAACGATCAAATACTCAACGAGGTCAGAATACTCTGCCAGGTTAACCACCGGAGCCTCGTGAGACTCTTGGGCTGTTCCGTGGAGCTTTCAGTGCCACTTCTGATCTACGAGTATGTCTCCAATGGAACCCTTTTTGAGCACCTTCACTGCACCACTTCAGAAAAATGGATTCGTCTTGGATGGCACGTTAGGCTGAGAATCGCGCACCAAACCGCTGAAGGGCTTGCCTATCTCCACAATGCAGCCATACCAACAATCTACCACAGGGATATCAAGTCCAGCAACATTCTCTTGGATGAAAATCTTGATGCTAAAGTTGCTGACTTTGGCCTTTCAAGGCTAGCTGTAAGTGAAGCTACTCACATCACAACGTGTGCTCAAGGAACCTTGGGTTATCTCGACCCTGAATACTATGTCAACTTTCAGCTCACAGATAAGAGTGATGTGTACAGTTTTGGGGTGGTTTTGTTGGAGCTGCTGACTTCTAAAAAGGCGATTGATTTTAACAGAGAAGAGGAGGATGTGAACTTGGTGGTTCTGATCAAGAGGGTTTTGAAGGAAGAGAGGTTGATGGAAGTAGTTGATCCGATGCTGAAAACTGGTGCTAATAGACTTGAGTTGGAGAGTATGAAGGCGTTTGGGTTTCTCGCTGCTGCGTGTTTAGATGAACGAAGGCAAAATAGGCCCTCAATGAAAGATGTTGCTGATGAGATTGAGTACATTATTAGCCTTGTTGCTGATCTTAAGGCTAAGGTCTAA 1914 0.4869 MRNINQYLLFIVITTLVALSSVLGAALKRCPDCGKTQVPYPLSTAPNCGDPSYKIRCTGGMLFLDSISGSAYAITAINPSSQRLIILPPGLASSSMCVSTDFQNGGMWIDSNSPFNITSSNTEIRLNCSKEVFTETAWNCSSSSICHKYLKENAAAAKACGGLICCDLKTGGSSTAYRLRVRKERCSAYASFPNFDPSLPVSMWRPGVEIEWQLPEEPPCRVVGDCLGLANSDCLPAAGGGRKCLCKYGFLWDPVNVICQNANSCQHGRCQHRRKKTPLIGGLALAGATMLIGSLIMALVFYLKRRRMKRETQESINKARNILNTDNSSGKSAKIFTMKEIIKATNNFSDDNLLGAGGFGEVFKATLDDGTITAIKRPKLGNTRGNDQILNEVRILCQVNHRSLVRLLGCSVELSVPLLIYEYVSNGTLFEHLHCTTSEKWIRLGWHVRLRIAHQTAEGLAYLHNAAIPTIYHRDIKSSNILLDENLDAKVADFGLSRLAVSEATHITTCAQGTLGYLDPEYYVNFQLTDKSDVYSFGVVLLELLTSKKAIDFNREEEDVNLVVLIKRVLKEERLMEVVDPMLKTGANRLELESMKAFGFLAAACLDERRQNRPSMKDVADEIEYIISLVADLKAKV* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3379 637 Pfam Protein kinase domain 349 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3379 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Lja1g3379 637 SMART serkin_6 348 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3379 637 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Lja1g3379 637 CDD STKc_IRAK 354 624 - -
Lja1g3379 637 Gene3D Transferase(Phosphotransferase) domain 1 424 634 - -
Lja1g3379 637 ProSiteProfiles Protein kinase domain profile. 348 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3379 637 Pfam Wall-associated receptor kinase galacturonan-binding 30 85 IPR025287 GO:0030247
Lja1g3379 637 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 15 29 629 - -
Lja1g3379 637 Gene3D Phosphorylase Kinase; domain 1 307 423 - -
Lja1g3379 637 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 629 IPR045274 GO:0007166
Lja1g3379 637 SUPERFAMILY Protein kinase-like (PK-like) 330 623 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3379 Lja-Chr1 42102052 42108652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3379 25 631 Receptor kinase-like Gene Family AT5G02070 55.161 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lja1g3379 Pkinase 3.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3379 - - gmx:100775709 900.582