Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3378 ATGGGCAATTGCTGCAGATCCCCAGCCGCCGTTGCCCGAGAAGATGTCAAATCGAGCTTCTCCAACCACGATCACGCCAAGCGAGCCGCCGACGGAGCCACCGCCGGAAACAAGAAGCATCCGCCGGCGCCGGTGGCAGTTCTCGCCGGCGTAGCGAAAGAGAATATGGAGGACCGTTACTTAGTTGACCGCGAGCTCGGCCGCGGCGAATTCGGCGTGACGTACCTGTGTATTGATCGGGACACCAGGGAGCTGCTGGCGTGCAAGAGCATCTCCAAGCGGAAGCTGAGGACCGCCGTTGACGTCGACGATGTTCGCCGCGAGGTTGCTATTATGCGCCACCTGCCGCGGAGCCCTTCCATTGTGTCGCTCAGGGAGGCTTGTGAAGACGATAATGCTGTTCATCTTGTTATGGAGCTTTGTGAGGGTGGAGAGCTTTTTGACCGGATTGTCGCTCGCGGCCACTATACCGAACGGGCTGCCGCGGCTGTTGTGAGGACCATTGTCGAGGTTGTGCAGCTCTGCCACAAGCACGGGGTCATCCACCGTGACCTTAAGCCGGAGAATTTCTTGTTTGCGAATAAGAAGGAGAATTCGCCTCTCAAGGCCATTGATTTTGGGCTCTCCATATTCTTCAAGCCAGGTGAGAGGTTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCGGAGGTGCTAAAGCGGAGCTATGGACCTGAAATAGATATATGGAGTGCGGGAGTAATTCTCTATATCTTACTCTGCGGTGTTCCCCCATTTTGGGCTGAATCTGAGCAAGGAGTTGCCCAGGCCATTCTTCGAGGGCTAATAGATTTCAAACGTGAACCGTGGCCCAGTATTTCTGAAAGTGCTAAAAGTCTTGTTAAGCAAATGTTAGAACCAGACCCTAAGCTTCGATTAACTGCCAAACAAGTGCTTGAGCATCCCTGGCTCCAAAATGCTAAGAAAGCTCCTAATGTTCCTCTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCAGTGATGAATAGATTCAAAAGAAAAGCCCTTAGGGTCATGGCTGATTTCTTATCCAATGAAGAAGTTGGGGACATCAAAGATATGTTCAAGCAGATGGATAGTGATAATGATGGTGTTGTTTCCATTGAAGATCTAAAAGCTGGATCTCGTAACTTAGGGTCCCAACTTGCTGAATCTGAAGTTCAGATGCTTATTGAAGCTGTAGATAATAATGGTAAGGGAACAGTAGACTACGGAGAATTTGCTGCTGTTACTCTTCATTTGAAAAAGATGGCTAATGATGAGCATCTCCGCAAGGCCTTCTCCTATTTTGACAAGGATGGGAATGGATATATTGAACCAGATGAGTTACGGAATGCCTTGATGGAAGATGGAACTGATGACTGTACAGATGTAGCAAATGACATTTTCCAAGAAGTGGACACAGATAAGGATGGACGGATAAGCTATGATGAATTTGTGGCTATGATGAAAACGGGAACGGATTGGAGAAAAGCATCTAGGCATTACTCTCGTGGAAGATTCAATAGCTTGAGCTTGAAGTTGATGAAAGATGGTTCTTTAAACTTAGGAAATGAATAG 1605 0.4785 MGNCCRSPAAVAREDVKSSFSNHDHAKRAADGATAGNKKHPPAPVAVLAGVAKENMEDRYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVDDVRREVAIMRHLPRSPSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVVRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRSYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVKQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSVMNRFKRKALRVMADFLSNEEVGDIKDMFKQMDSDNDGVVSIEDLKAGSRNLGSQLAESEVQMLIEAVDNNGKGTVDYGEFAAVTLHLKKMANDEHLRKAFSYFDKDGNGYIEPDELRNALMEDGTDDCTDVANDIFQEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3378 534 SMART efh_1 401 429 IPR002048 GO:0005509
Lja1g3378 534 SMART efh_1 365 393 IPR002048 GO:0005509
Lja1g3378 534 SMART efh_1 473 501 IPR002048 GO:0005509
Lja1g3378 534 SMART efh_1 437 465 IPR002048 GO:0005509
Lja1g3378 534 CDD EFh 437 499 IPR002048 GO:0005509
Lja1g3378 534 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Lja1g3378 534 Gene3D Transferase(Phosphotransferase) domain 1 146 326 - -
Lja1g3378 534 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Lja1g3378 534 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Lja1g3378 534 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Lja1g3378 534 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3378 534 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 13 6 515 - -
Lja1g3378 534 SMART serkin_6 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3378 534 SUPERFAMILY Protein kinase-like (PK-like) 51 343 IPR011009 -
Lja1g3378 534 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Lja1g3378 534 Pfam Protein kinase domain 62 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3378 534 MobiDBLite consensus disorder prediction 17 34 - -
Lja1g3378 534 SUPERFAMILY EF-hand 347 525 IPR011992 -
Lja1g3378 534 Pfam EF-hand domain pair 436 499 IPR002048 GO:0005509
Lja1g3378 534 Pfam EF-hand domain pair 366 425 IPR002048 GO:0005509
Lja1g3378 534 Gene3D - 327 502 - -
Lja1g3378 534 CDD STKc_CAMK 59 317 - -
Lja1g3378 534 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Lja1g3378 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 515 - -
Lja1g3378 534 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Lja1g3378 534 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Lja1g3378 534 Gene3D Phosphorylase Kinase; domain 1 61 145 - -
Lja1g3378 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Lja1g3378 534 MobiDBLite consensus disorder prediction 15 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3378 Lja-Chr1 42091443 42101079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3378 31 531 EF-hand Containing Proteins AT1G74740 68.533 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja1g3378 Pkinase 3.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3378 K13412 - gmx:100793170 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3378 1 42091443 42101079 Lja1g3378 1 42091443 42101079 ECH