Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3377 ATGGAGGGTCATCAACTCCATCACCAACACCATCGACGAAATCAGCATCAGAATCTGAATCAGCATCAACATCAGCAGCAGCAGCAGCAACAACAACAACACGCTCATAACATAATCGCTAGTGCTAGTGTAAGCGCGGATGTAACGGATAGGTTCCCTCAATGGAGTATTCAAGAGACAAAGGAGTTCCTCGTGATCCGTGCAGAGCTGGATCAGACTTTCATGGAGACAAAGAGGAACAAGCAGCTTTGGGAAGTCATCTCCAACCAGATGAAGGAAAAGGGTTACCATAGAAGTGCAGAGCAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGCTATAAGGGATGTGAAACGATGGAGCCTGAAGCCTCAAGGCAGCAATTTCCATTTTACAATGATCTTCAAGCGATTTTCACGGTGAGGATGCAGAGAATGTTGTGGGCTGAAGCAGAAGGAGGGTCCAAGAAGAAGGGGGTGCACCTCTCTTCCGAGGATGATGATGATGGCAATGAAGAGAGTGAGGGAGATCACAACAAGGCTGGTAACAGCAGAAAGAAGAAAAAGAGTAAGGTCGCGGGCGGAGGAAGCGGTGGTGGTAGTAGCAACTTGAAGGAGATTCTAGAGGAGTTCATGAGGCAACAAATGCAAATGGAAGCTCAGTGGATGGAGGCTTATGAAGCAAGGGAGAGTGAGAGAAGGTTGAGGGAGATGGAGTGGAGGCAAGCCATGGAAGCATTGGAGAATGAGAGGGTAATGATGGATCAGAGATGGAGAGAGAGGGAAGAGCAAAGAAGGATCAGAGAGGAAGCTAGGGCTGAGAATAGAGATGCTCTAATCACAGCTTTGCTCAACAAGCTAAGAAGAGAAGATATGTAG 879 0.4767 MEGHQLHHQHHRRNQHQNLNQHQHQQQQQQQQQHAHNIIASASVSADVTDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRYKGCETMEPEASRQQFPFYNDLQAIFTVRMQRMLWAEAEGGSKKKGVHLSSEDDDDGNEESEGDHNKAGNSRKKKKSKVAGGGSGGGSSNLKEILEEFMRQQMQMEAQWMEAYEARESERRLREMEWRQAMEALENERVMMDQRWREREEQRRIREEARAENRDALITALLNKLRREDM* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3377 292 MobiDBLite consensus disorder prediction 154 203 - -
Lja1g3377 292 Pfam Myb/SANT-like DNA-binding domain 54 138 IPR044822 -
Lja1g3377 292 MobiDBLite consensus disorder prediction 1 36 - -
Lja1g3377 292 Coils Coil 12 32 - -
Lja1g3377 292 CDD GT1 53 118 - -
Lja1g3377 292 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 290 - -
Lja1g3377 292 PANTHER - 1 290 - -
Lja1g3377 292 Gene3D - 55 116 - -
Lja1g3377 292 ProSiteProfiles Myb-like domain profile. 55 111 IPR001005 -
Lja1g3377 292 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3377 Lja-Chr1 42062140 42064302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3377 22 290 Trihelix Transcription Factor Family AT2G38250 53.357 5.57e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja1g3377 Myb_DNA-bind_4 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3377 - - gmx:100778195 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3377 1 42062140 42064302 Lja1g3377 1 42062140 42064302 ECH