Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3365 ATGAGAACCCGTTCAACCACCACATGGGTCATCCTCGTGGCCACACTGTATTTCCTCGCCAGCTTCTTTGAATCGGAAGCCAAAACCATAGACCCCTACAAGGTTCTTGGGGTTGATAAAAATGCAGGTCAGCGAGAAATTCAGAAGGCTTTCCACAAGCTCTCTCTTCAGTATCACCCTGACAAGAACAAAAGCAAAGGTGCACAAGAGAAGTTTTCGCAGATCAATAATGCGTATGAGATTTTATCCGATGAAGAGAAGAGGAAGAATTATGACTTGTATGGAGATGAAAAAGGAAATCCTGGATTTGATGCTGGCCATCCTGGAGGTTTCACAGGGGGTGGTCCTGGACAAAACAATTTTAACTTCAGACCAGGGGACTGGCAGGGTGGGCAAGGAGGATCTAACTCATTCTCCTTTTCCTTCGGCGGCTCAGGCAATTCAAATCCTTTTGGGTTCGGGTTAGATGATCTTTTTGGCAGTTTTTTTGGTGGTGGTGGTGGTGGTGGTGCTGGGAGACAGTTCGGCGGCTTTGGCAGTTCATCTAATTCTCAATCTGGCTCCAAGAGTTCCCCCAAAAGTTTTAAAGCCATAAATTCACATATCTACAAGAAAGAAATAGCTGATGAAGGGATGACCTGGCTTTTGTTGTCTTATACACCTTCATTGAAAGGGATCCAATACTTTGAATCCACAGTACAGGAAGTTGCAAGTTCATTGCAAGGAGCTTTGAAGGTTGGAAGCATCAATTGTGAAAAGGAAGTCTCATTCTGTAAGGAGCTTGGTGTGTATCCGCGCAAAGCTCCTAGGCTTTTTGTTTATTCTTACAAGGAGAAAGAAAAGGGTTCTCTGGTGGAATATGGTGGTGACCTGGCTACTAAGGATCTGAAGGCTTTCTGTCAAGAGAACTTGCCTAGGTTTTCAAAACGGATTGACTTGAATCATCTTGATCAGTTTAGCACTGCAGGGAAGTTGCCTAGGGTAATGCTTCTCTCCACCAAGAAGGACACTCCTGTAATTTGGCGTGTTCTCAGTGGCTTGTATCGCAAACGCATTGCTTTCAGTGATGTAGAGGTTCGTGATGTTTCTGATCCAAGAGTGAAAAGGCTAGGAGTTGATGCTCTTCCAGCTATTGTAGGTTGGCTACCTAATGGAGAGAACCGGGTCCTGAAAACAGGAATTTCTGTAAAAGATATAAAATCTGCAGTTCATGATCTTAGTAACATACTTGAAAGTTTTGAAAAAACATGTAAAAAGGAAGCATCAAGTCAGTCCACGAAGGCTCAGACTGATTCAGAAGAGGGGCTCATACAGTTGCTTTCTCGGTCGAACTTTGAGGCTCTATGTGGTGGGAGAACTCCTGTCTGCATAATTGGTGCTTTCAGATCTTCTAAAGTTAGAGAAAAGCTAGAATCAATTCTCTCTGTGGTCTCTCAGAAGTCATTGTCAAGAAGGCCAAATTTAGGAGCCAGCTCTAGAGACTCCATTTCTTATGCTCTCTTAGATGCTGCAAAGCAACAGGCATTTCTAAATGCATTTGACAAAAAAGGTTATAAATCGTCAGATAAGTTGCTGATTGCATACAAACCTAAGAGAGGGAAGTACACTGTATTTATGGGTGAGATGACAATAGAGGAGGTAGAGAATTTTATCAGCTCTGTTCTCAGTGGAGATATACCGTTCAGGGAAACACGTCAGAAACCTGAACTCAAGTAG 1716 0.4318 MRTRSTTTWVILVATLYFLASFFESEAKTIDPYKVLGVDKNAGQREIQKAFHKLSLQYHPDKNKSKGAQEKFSQINNAYEILSDEEKRKNYDLYGDEKGNPGFDAGHPGGFTGGGPGQNNFNFRPGDWQGGQGGSNSFSFSFGGSGNSNPFGFGLDDLFGSFFGGGGGGGAGRQFGGFGSSSNSQSGSKSSPKSFKAINSHIYKKEIADEGMTWLLLSYTPSLKGIQYFESTVQEVASSLQGALKVGSINCEKEVSFCKELGVYPRKAPRLFVYSYKEKEKGSLVEYGGDLATKDLKAFCQENLPRFSKRIDLNHLDQFSTAGKLPRVMLLSTKKDTPVIWRVLSGLYRKRIAFSDVEVRDVSDPRVKRLGVDALPAIVGWLPNGENRVLKTGISVKDIKSAVHDLSNILESFEKTCKKEASSQSTKAQTDSEEGLIQLLSRSNFEALCGGRTPVCIIGAFRSSKVREKLESILSVVSQKSLSRRPNLGASSRDSISYALLDAAKQQAFLNAFDKKGYKSSDKLLIAYKPKRGKYTVFMGEMTIEEVENFISSVLSGDIPFRETRQKPELK* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3365 571 Pfam DnaJ domain 31 92 IPR001623 -
Lja1g3365 571 SUPERFAMILY Thioredoxin-like 195 304 IPR036249 -
Lja1g3365 571 MobiDBLite consensus disorder prediction 174 194 - -
Lja1g3365 571 CDD DnaJ 31 84 IPR001623 -
Lja1g3365 571 SUPERFAMILY Chaperone J-domain 20 99 IPR036869 -
Lja1g3365 571 Gene3D Glutaredoxin 181 304 - -
Lja1g3365 571 ProSiteProfiles dnaJ domain profile. 31 95 IPR001623 -
Lja1g3365 571 SMART dnaj_3 30 87 IPR001623 -
Lja1g3365 571 Gene3D DnaJ domain 28 176 IPR036869 -
Lja1g3365 571 PRINTS DnaJ domain signature 87 106 IPR001623 -
Lja1g3365 571 PRINTS DnaJ domain signature 51 66 IPR001623 -
Lja1g3365 571 PRINTS DnaJ domain signature 67 87 IPR001623 -
Lja1g3365 571 PRINTS DnaJ domain signature 33 51 IPR001623 -
Lja1g3365 571 PANTHER DNAJ PROTEIN ERDJ3A 12 570 - -
Lja1g3365 571 ProSitePatterns Nt-dnaJ domain signature. 72 91 IPR018253 -
Lja1g3365 571 PANTHER DNAJ PROTEIN ERDJ3A 12 570 - -
Lja1g3365 571 MobiDBLite consensus disorder prediction 176 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3365 Lja-Chr1 41880592 41883784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3365 19 94 C2H2 Transcription Factor Family AT1G74250 37.805 2.45e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3365 - - gmx:100796871 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3365 1 41880592 41883784 Lja1g3365 1 41880592 41883784 ECH