Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3363 ATGGAATTTGAGTCCATTGAAAAGGTTAGAGAATTTTATAATTCTTTTGCTAAGAAGAATGGTTTTGGAGTACGTGTTCGTTCAAGTAAACCAAAGAGAGCAGTTTTGGTATGTTGCAATGAAGGTCAACATAAAGTGAAGATCTCAAGAACTGAAGAAATTCAAGATAGCACTAATCAAACTAAAAGAAAGTGCTCAACTATCCGAAGTGGTTGTGAGGCTTCACTTATTGTTTCAAGAGGCACAACCAAAAGTAAGTGGATGATAAAGTCTTTTAACAATGATCATAATCATGTCATGGTTAGTCCTAAAAGTGTGTCCTATATGAGGTGCCATAAAAAGATGAGTGTAGCAGCAAAGAGTCTTGTTGAAAAATTTGAAGAAGAAGGCATACCGACTGGAAAGGTTGCTGCAATTTTTAATGATGGTGACTCAACTTTCACTAATAGGGATTGTTGGAATTACATTAGAAATGTTCGGAGAAAGAATTTAGATGTTGGAGATGCTCAAGCTGTTTTCGATTATTGTAAACGGAAACAAGTAGAAAATTCTAACTTTTTCTATGCAATCCAATGTGATGAAGATTCTCGGATGGTGAACTTGTTTTGGGTGGATGCTAGATCACGATTATCTTACCAACTCTTTGGGGATCAATGGGTGGAAAAAAAACCTATATCTATCATAACTGATCAAGATTTAGCTATGAAAGCTGCTTTGGCAAAAGTCTTTCCAGAAAGCCGTCACCGCCTGTGTTTGTGGCATATTATAAAGAAGTTTCCTGAGAAGTTAGCTCACATATATCACAAACAATCTATTTTCAAGCGAGATATGAAAAGATGCATTCGAGGTTCACATAGCATTCAAAGTTTTGAAGAAGAATGGATGCGCATAATGGTCGAGTATAACTTGAAGGAAAATGAATGGCTTCAAGGGTTATATAAGATTAGAGAATCTTGGATACCAATTTATAACAGGAGTACATTCTTTGCTGGAATGAATACTACTCAAAGAAGTGAAAGTATTAATGCTTTCTTTGATTCTTTTGTTGATGCATCAACAACATTACAAGAATTTGTGTTGAAGTTTGAGAAAGCTGTTGAAAGTCGCTTAGAGGCAGAACGAAAGGAAAATTATGAATCAAGGCATAAGTCTCGTATTTTGAGTACCGGGTCAAAACTTGAGGAACATGCGGCATCTATATACACCAGAAATATTTTTGCTAAATTTAAAGGTGAGCTAGAGAAAATCAACCGATTCACTAGACATAAGTTTAGAAGAGATGGGCCTAAATATGTGTATCAGGTGTCCAATTGCTATGATGCTCGAGATACTTTCACTGTTGATATAGACTTAGACTCACATATTGCTAAATGTGGCTGTGAACTATATGAATTTATGGGGATATTGTGCCGACACATACTAGTAATTTTCCAAGCAAAGGGAGTTGTTCAGATTCCTAGTCATTTTATTATGGAACGATGGACTAAGGATGCTAACAGAGGTCTTGAAGACACTTATAATGATAATGATTTGGGTGAAAAATCTGATACATTAAAGATTTTAAGAAGGGTGCATGTGCAACGAGAAGCAAGTTTTTTAGCTGATCTAGCAGAAGATTCTGAGGAAGCATACAATTTCATTATTTCAGAAATGAAGCAAACTCATAAGTCAGCTGCTGCAATGAAAACAAGTGAAGGAGTAGCACTTTTGGAGTCAAGCGAGAAGAATGTAAATCAAGTTTGCTCATCTGAGCAAGTGAGTGAACCACCACAACTGACTATTGGAAACCCGCATGTATCACAAACAAAGGGGAGAAAGAAGGATGGAGGAAAAATGACTCAAAATGGCAGATTTAAGAGTGGACTTGAAGTGTCACTTAATAAATCAGTTGTCAAAAGGAAAGCATGTCATGAATGCGGGGAGCACGGTCACAATAGCAGAACTTGCAAGAAAAGAAATCAAAATGATTAA 1971 0.3623 MEFESIEKVREFYNSFAKKNGFGVRVRSSKPKRAVLVCCNEGQHKVKISRTEEIQDSTNQTKRKCSTIRSGCEASLIVSRGTTKSKWMIKSFNNDHNHVMVSPKSVSYMRCHKKMSVAAKSLVEKFEEEGIPTGKVAAIFNDGDSTFTNRDCWNYIRNVRRKNLDVGDAQAVFDYCKRKQVENSNFFYAIQCDEDSRMVNLFWVDARSRLSYQLFGDQWVEKKPISIITDQDLAMKAALAKVFPESRHRLCLWHIIKKFPEKLAHIYHKQSIFKRDMKRCIRGSHSIQSFEEEWMRIMVEYNLKENEWLQGLYKIRESWIPIYNRSTFFAGMNTTQRSESINAFFDSFVDASTTLQEFVLKFEKAVESRLEAERKENYESRHKSRILSTGSKLEEHAASIYTRNIFAKFKGELEKINRFTRHKFRRDGPKYVYQVSNCYDARDTFTVDIDLDSHIAKCGCELYEFMGILCRHILVIFQAKGVVQIPSHFIMERWTKDANRGLEDTYNDNDLGEKSDTLKILRRVHVQREASFLADLAEDSEEAYNFIISEMKQTHKSAAAMKTSEGVALLESSEKNVNQVCSSEQVSEPPQLTIGNPHVSQTKGRKKDGGKMTQNGRFKSGLEVSLNKSVVKRKACHECGEHGHNSRTCKKRNQND* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3363 656 ProSiteProfiles Zinc finger CCHC-type profile. 636 651 IPR001878 GO:0003676|GO:0008270
Lja1g3363 656 SMART 26again6 456 483 IPR006564 GO:0008270
Lja1g3363 656 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 217 IPR031052 GO:0006355
Lja1g3363 656 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 221 578 IPR031052 GO:0006355
Lja1g3363 656 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 1 217 - -
Lja1g3363 656 Pfam FAR1 DNA-binding domain 11 101 IPR004330 -
Lja1g3363 656 ProSiteProfiles Zinc finger SWIM-type profile. 445 481 IPR007527 GO:0008270
Lja1g3363 656 Pfam SWIM zinc finger 445 480 IPR007527 GO:0008270
Lja1g3363 656 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 221 578 - -
Lja1g3363 656 MobiDBLite consensus disorder prediction 584 600 - -
Lja1g3363 656 Pfam MULE transposase domain 193 258 IPR018289 -
Lja1g3363 656 MobiDBLite consensus disorder prediction 584 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3363 Lja-Chr1 41866577 41868706 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g3363 FAR1 1.3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3363 - - qlo:115970754 719.539