Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3361 ATGGAGACTAGTCCTGCTTGTAAACCTACTATTTCTGCAGGGTCATCTTCCAAGAGCAAGGAGAAGAAGGGTGGTGTGAAGAAAACAACCAAAAGAGAAGTGAAGCTTTCCACTGACCCACAAAGCGTGGCGGCTAGAGAGAGAAGGCACAGAATAAGTGACAGGTTCAAGGTCCTGCAGAGCATGGTCCCTGGAGGGAGCAAGATGGACACAGTTTCCATGTTGGAGGAAGCCATTCACTATGTCAAGTTCCTCAAGACTCAGATTTGGCTTCTTCACCAAACCATGATTAACTTTGTAGATGATCATGTCTCATCATCACCCGCCATAATGTCCTTTCCTGGGTGGGAGCATTTTCCAAATGAACACAACATTTCCCTTCAGCAAAATCCTTCACTTTCAGTAGATTTGGATTCTATGCAGAGTTTGCCACAGCTACCCCTTGATCAGTTCTTCTTCCAAGGTGAAGAAGATGCCACTATGAAATATTCGCCAGCTTATAATTAG 507 0.4477 METSPACKPTISAGSSSKSKEKKGGVKKTTKREVKLSTDPQSVAARERRHRISDRFKVLQSMVPGGSKMDTVSMLEEAIHYVKFLKTQIWLLHQTMINFVDDHVSSSPAIMSFPGWEHFPNEHNISLQQNPSLSVDLDSMQSLPQLPLDQFFFQGEEDATMKYSPAYN* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3361 168 Pfam Helix-loop-helix DNA-binding domain 46 85 IPR011598 GO:0046983
Lja1g3361 168 SMART finulus 42 91 IPR011598 GO:0046983
Lja1g3361 168 MobiDBLite consensus disorder prediction 20 35 - -
Lja1g3361 168 MobiDBLite consensus disorder prediction 1 19 - -
Lja1g3361 168 MobiDBLite consensus disorder prediction 1 46 - -
Lja1g3361 168 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 17 159 - -
Lja1g3361 168 CDD bHLH_AtIND_like 37 92 - -
Lja1g3361 168 Gene3D - 29 93 IPR036638 GO:0046983
Lja1g3361 168 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 94 IPR036638 GO:0046983
Lja1g3361 168 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 17 159 IPR045843 GO:0003700|GO:0006355
Lja1g3361 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 85 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3361 Lja-Chr1 41854922 41855428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3361 26 114 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.685 4.46e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g3361 HLH 8.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3361 - - gmx:113000114 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3361 1 41854922 41855428 Lja1g3361 1 41854922 41855428 ECH