Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3359 ATGTCTCTTCCCACAGCATACCAAGAGCACCTTCCAGCCGCCCCATACTGGCTAAACAAAGGAGACAACGCATGGCAGATGACAGCATCTACCCTCGTAGGCCTCCAAAGCATGCCAGGCCTTGTGATCCTCTATGCAAGCATAGTGAAGAAGAAATGGGCAGTGAACTCAGCTTTCATGGCTCTCTACGCCTTCGCCGCAGTTCTCATTTGCTGGGTCCTTGTCGGTTACCGCATGGCCTTTGGAGAAGAACTTCTACCTTTCTGGGGTAAAGGTGCACCTGCACTAGGCCAGAAGTTTCTGATAAGACAGGCCAAAGTTCCTGAGAGCACACACTTTTATAAGAATGGTACACTAGAGACATCAACGGAAGAACCGTTTTTTCCGATGGCGTCTCTAGTGTACTTTCAGTTTACCTTTGCTGCTATTACTATGATTTTGCTTGCTGGGTCTGTGCTTGGGAGGATGAATATTAAGGCTTGGATGGCTTTTGTGCCTCTCTGGCTTATTTTTTCATACACTGTGGGTGCTTTTAGTTTGTGGGGTGGTGGGTTTCTTTACCACTGGGGTGTTATTGATTACTCTGGTGGCTATGTTATTCACCTCTCTTCTGGGATTGCTGGCTTCACTGCTGCTTATTGGGTTGGGCCAAGAGTGAAGAGTGATAGGGAGAGGTTCCCACCAAACAATATTCTGCTGATGCTTGCAGGTGCAGGGTTGCTGTGGATGGGGTGGTCAGGGTTCAATGGCGGAGCACCATACGCAGCAAACCGTGCAGCTTCACTTGCGGTGTTGAACACGAACGTTTCTGCCGCCACGAGCCTCCTTGTGTGGACTTGTCTGGATGTCATCTTCTTCGGGAGACCGTCGGTGATCGGAGCAGTTCAGGGCATGATGACCGGACTTGTATGCATCACCCCAGGGGCAGGGCTTGTGCAATCGTGGGCAGCTATAGTGATGGGAATAGCAGCTGGTAGCATTCCATGGTTTACCATGATGATCCTGCATAAAAAGTCAAGCCTGCTACAAAAGGTAGATGACACCCTTGGTGTATTCCACACACATGCTGTGGCTGGCCTTTTGGGTGGCCTCCTCACAGGACTCTTAGCAGAACCAGCACTTTGCAGACTATTATTGCCAGTGACAAACTCAAGAGGCGCATTCTATGGTGGAGATGGTGGTGTGCAGTTCGTGAAGCAACTGGTTGCAGCCTTGTTTGTCATTGGATGGAACTTGGTCTCCACCACTATCATTCTCCTTGTCATACAATTGTTCATACCATTGAGGATGCCAGACGAGCAGCTTGAAATCGGAGATGACGCTGTCCACGGCGAGGAAGCTTATGCCCTTTGGGGTGATGGGGAAAAATTTGACCCAACAAGACATGGTTCCATAACCACTGGCCATGGAGTGTCACCTTATGTTAACGGTGCAAGAGGTGTGACTATAAATTTATGA 1458 0.4931 MSLPTAYQEHLPAAPYWLNKGDNAWQMTASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVGYRMAFGEELLPFWGKGAPALGQKFLIRQAKVPESTHFYKNGTLETSTEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRVKSDRERFPPNNILLMLAGAGLLWMGWSGFNGGAPYAANRAASLAVLNTNVSAATSLLVWTCLDVIFFGRPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGIAAGSIPWFTMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPALCRLLLPVTNSRGAFYGGDGGVQFVKQLVAALFVIGWNLVSTTIILLVIQLFIPLRMPDEQLEIGDDAVHGEEAYALWGDGEKFDPTRHGSITTGHGVSPYVNGARGVTINL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3359 485 TIGRFAM amt: ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lja1g3359 485 PANTHER AMMONIUM TRANSPORTER MEP2 1 482 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lja1g3359 485 SUPERFAMILY Ammonium transporter 17 430 - -
Lja1g3359 485 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lja1g3359 485 Gene3D Ammonium transporter AmtB like domains 4 451 IPR029020 -
Lja1g3359 485 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lja1g3359 485 PANTHER AMMONIUM TRANSPORTER 1 482 - -
Lja1g3359 485 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005887
Lja1g3359 485 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005887
Lja1g3359 485 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005887
Lja1g3359 485 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005887
Lja1g3359 485 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3359 Lja-Chr1 41831946 41836347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3359 130 485 Inorganic Solute Cotransporters AT2G38290 76.602 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3359 K03320 - gmx:100790119 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3359 1 41831946 41836347 Lja1g3359 1 41831946 41836347 ECH