Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3356 ATGGGTGGTGGTGTGACTCCAGTCAAGAGTCTTTGCCCTGGGAAGAGTTTTTTGAGAATTAGGACTAGGGTTATCCGAATGTGGGAAGCATGCCCTGTGAACGATCCCTTGAGTCCCTATGCCTTGCATATAGTTCTAATTGATGCTGAGGGTGACAAAATTGAAGCCATTGCTCGGAAGGGTCTGATGTCCAAATTCAAGAGCGAACTCCGTGAAGGCAAAGTTTACACCATCACTTATTTCTCAGTTCTTTCAAACAGTGGCGGTTTTATGGCTTCTGAGCATGATTACAAGATTATGTTCAATGAAAAAACTAGGGCTGCAGTTGAAGAAGCAATTGGAATCCCAATGACTAAATACTCCTTCAAGGACACTGATCAGATATTGGCTACTGGTGGTGATTCTGACTTTTTAATTGGCCATGTTGTAATTCAGAATGTCATGAATGCTACTGTCCTATTATGGAATCCAGCTATACCTGAAGCTGTCTCATTTCATAATGGGTTGGCCCTTCATGGAATCGATGCCGATTTGCCTCTAGCTGAAGCTGTTGATTCTGATCATGTACCAGTGATCACCTTAGAGGATGAATTTCTAAAGCTTTATCCTAGGAAAGACATAAGGGAACTCAATGATACTGCTGAGGATGGTATTTTTATTGTTATGGCGAATATATCTGGTCTGGTTGAAGGGGAAAAGTGGTGGTACTCTGCCTGTAGTTGTCATAAGGCTGTGACTGTGGAAGATGGAATCTCTTATTGTCCTGGCTGTTCCAAAGTTGTGCTAAGTGTTACTCCAAGATTCAGAATCAAGTTAGAAGTTGATGATGGTCTTGGCTGCGGTGTATTTGTTGTTTTTGACACAGATTGCCAACAATTGCTGAGCAAGACCTGCAAGGAACTGATCATGGCTTCCAAGGTGAATGTAGTTCACCTGCTAACTTTTCTTTACATGATCTAA 960 0.4198 MGGGVTPVKSLCPGKSFLRIRTRVIRMWEACPVNDPLSPYALHIVLIDAEGDKIEAIARKGLMSKFKSELREGKVYTITYFSVLSNSGGFMASEHDYKIMFNEKTRAAVEEAIGIPMTKYSFKDTDQILATGGDSDFLIGHVVIQNVMNATVLLWNPAIPEAVSFHNGLALHGIDADLPLAEAVDSDHVPVITLEDEFLKLYPRKDIRELNDTAEDGIFIVMANISGLVEGEKWWYSACSCHKAVTVEDGISYCPGCSKVVLSVTPRFRIKLEVDDGLGCGVFVVFDTDCQQLLSKTCKELIMASKVNVVHLLTFLYMI* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3356 319 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
Lja1g3356 319 Gene3D - 4 111 IPR012340 -
Lja1g3356 319 CDD RPA1_DBD_A_like 19 106 - -
Lja1g3356 319 Pfam Replication factor-A C terminal domain 221 305 IPR013955 -
Lja1g3356 319 CDD RPA1_DBD_C 205 302 IPR013955 -
Lja1g3356 319 PANTHER REPLICATION FACTOR A 1, RFA1 144 302 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja1g3356 319 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 144 302 - -
Lja1g3356 319 Pfam Domain of unknown function DUF223 44 106 IPR003871 -
Lja1g3356 319 SUPERFAMILY Nucleic acid-binding proteins 204 302 IPR012340 -
Lja1g3356 319 Gene3D - 199 311 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3356 Lja-Chr1 41807887 41810296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3356 1 147 Core DNA Replication Machinery Family AT5G08020 27.044 7.49e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3356 - - lja:Lj1g3v3385890.1 228.024