Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3355 ATGGATTTGAGGGTGGAAGAAAGAGATGATTCAGAATGTTCCAAGACAAGCCCTTCTAAGGAAGATGGTTGTGAAATGAGTGAAGAAGATGAAAGTAAGCAAAACACCAACAACAATGGAGGGAGCTCAAGCAACAGCACTGTGGAAGAGAATGACAAGAAGGGATCAGTGAGGCCTTATGTTAGATCCAAGTTGCCGAGGCTACGTTGGACCCCTGATCTTCATCTTCGCTTTCTCCATGCCGTTCAAAGACTTGGAGGACAAGAGAGAGCAACACCAAAGTTGGTTCTTCAGTTGATGAATATCAAGGGTTTAAGCATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGATTTCTGATACTAGTCAAGAAAGTGGAGACAGAAATGTTTATAATCTTAGCCAACTTCCCATGCTTCAAGGCTATAATCCAAGCCAAAGTTCATCATATAGGTGTGGATATGGGGATGCTTCTTTTGCCATGTATGAGAACATGCTACATAGGCCTTTCATGGGTCGAGGTTCAGCAGATAAATCCATGGCTGAATTTCATGGAAGAATGATTGAGAGTATCCATGGGATAAATAGTAACATCAATTGGACTAATAGTACTCTTTTTCAAGTGCATCCTTCCAACTTCAGTGAAACATCAACAACTAAAGTTCATGAACTACAAGATAAATTTCTCTCATTTGGTAGCTATGGATCACAAGTAAGCTTGAGTCAGATTGATCTCCATCCATCACCCCAAGTGAAGCCAAGTGCACAAGAGCTCATGCCTATTACTAAGCCTGCAAATTCAGTGGAAAAGACCCTGAAAAGGAAGGTTTCGGATATTGATCTTGACTTAGATCTGTCACTTAAATTAAGTTCAAGGAACCAAGAAAGCATAGAGGACCATAAAGTTGATAGCAACCTATCACTCTCTTTGTTTTCTCAATCCTCTACCTCCTCTTATCTTAGCAGAAGGCTGAAAGAAACACCAGATTTTTCTACGGAGCAAAGGAAAAAACGCGCCAGTAATGCTCTGGATCTGAGTATTTGA 1056 0.4072 MDLRVEERDDSECSKTSPSKEDGCEMSEEDESKQNTNNNGGSSSNSTVEENDKKGSVRPYVRSKLPRLRWTPDLHLRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKISDTSQESGDRNVYNLSQLPMLQGYNPSQSSSYRCGYGDASFAMYENMLHRPFMGRGSADKSMAEFHGRMIESIHGINSNINWTNSTLFQVHPSNFSETSTTKVHELQDKFLSFGSYGSQVSLSQIDLHPSPQVKPSAQELMPITKPANSVEKTLKRKVSDIDLDLDLSLKLSSRNQESIEDHKVDSNLSLSLFSQSSTSSYLSRRLKETPDFSTEQRKKRASNALDLSI* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3355 351 MobiDBLite consensus disorder prediction 330 344 - -
Lja1g3355 351 Gene3D - 65 122 - -
Lja1g3355 351 MobiDBLite consensus disorder prediction 328 351 - -
Lja1g3355 351 Pfam Myb-like DNA-binding domain 68 118 IPR001005 -
Lja1g3355 351 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g3355 351 PANTHER - 9 351 - -
Lja1g3355 351 MobiDBLite consensus disorder prediction 1 60 - -
Lja1g3355 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 122 IPR017930 -
Lja1g3355 351 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 351 IPR044848 GO:0003700
Lja1g3355 351 SUPERFAMILY Homeodomain-like 65 120 IPR009057 -
Lja1g3355 351 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 66 121 IPR006447 GO:0003677
Lja1g3355 351 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3355 Lja-Chr1 41798214 41800676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3355 56 127 G2-like Transcription Factor Family AT2G42660 75.000 5.14e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja1g3355 Myb_DNA-binding 7.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3355 - - gmx:100802192 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3355 1 41798214 41800676 Lja1g3355 1 41798214 41800676 ECH