Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3353 ATGGCTTCAACTCTTCTTTGTTTTCTCCTATTTCTCCCACTTCTAGACCATGTTTCTGCCAATTCTTTTCTCTTTGAAGGATTCAATAACAATAGCAAACTCACCCTTGAAGGAGCCTCTGTTATCAAAACCAGTGCTCTACTTAGACTCACCGACAGATCAACCAACATAGTAGGTCATGCATTCTACAAAACACCATTCAAAATGCTTAACAAAACAAACTCTTCACTCCAACCAAATGCTTATTCCTTCAGCACCTACTTTGTTTTCTCAATTGTGTCCCCAAGATCAGGCTCTGGTGGCTTCGGCCTCGCCTTCACCATAGCACCGTCAACAATTTTTCCGGGCGCCGAGGCCGGCCATTTCCTCGGCCTTGTTAACTCCACCAGTGATGGGGACTCCTCAAACCACATATTAGCAGTTGAGTTTGACACGGTGAATGGCTACAAAGAAGACTCTGACACTGAAGGAAACCATGTTGGTGTCAATGTGAATGGAATGAACTCAAAAATTACTGAGCCAGCTGCATACATTGAAGCTGGGACAGATAGTAATGTGAAGGAAGATTTCAGAATGGCAAAGGTTGATGCTGTCCAAGCTTGGATAGAATATGATAGCAAACGCAAAACTCTGAATGTAACAGTAGCTCCCCTACCATTACTAAGACCAAACAAGCCACTTATATCTTATCCTATTGAGCTTAACACAGTTTTTAAGGAAAACATGTATGTTGGTTTCTCAGCTTCAACAGGGAGCAAGGAAACAAGCTTTCATTATATATTGGGATGGAGTTTTTCAGTGAATGGAGATGCTCCTTTATTAAATAATTCTGAGCTTCCAAATCCGCCACCAAAGGAGCAAGATCCATCATCTTTTCCTTGGGTCAATCTTGCAATTGGAACCTTGTGTGTTCTGACCTTTACCTTGTTGTGTCTCTTGCTTTATCAAACATTGTGTAAGAGATACATGAGATTTGAGGCTCTTGAGGATTGGGAGATGGATTGTCCTCACAGATTTAGATACAAAGATCTTCACACCGCAACAAAGGGGTTCAAAGAGAGCCAGCTAATTGGAGTTGGAGGCTTTGGTGCTGTGTACAAAGGCGTGTTACCAACAACAGGAAGTGAGGTTGCTGTTAAGAGGATTGTGAGAGGCCCTATCCATGGGATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGGAGATTGAGACACAAGAATTTGGTGAATCTTCAAGGGTGGTGCAAGAAAAAGAATGATCTACTTTTAATCTATGATTTCATCCCAAATGGTAGCCTTGATTCTATTTTATATAATTCCAATTGCAATTTTGTTTTGGATTGGGGACAAAGATTCAAAATTCTCAAAGGCATCACTGCAGGGCTATTATACCTGCATGAAGAGTGGGAGCAAGTGGTTATCCATAGAGATGTGAAAACTAGCAACATTCTAATAGATGGAGATTTCAATGCTCGTTTAGGTGACTTTGGACTAGCAAGAATCTATGATCATGATCAAATATCACACACAACCAATGTGGTTGGCACAATTGGGTACATTGCACCGGAGTTAACTCGCACCGGAAAGTCTTCAACAAAATCAGATGTGTATGCTTATGGGGTTGTGCTCCTTGAAGTGGTTACAGGGAAGAGACCTGTTAGCTCAGATCAATTTTTCTTGGTGGATTGGGTTGTTGAAAATTACCAATTGGGTCAGATTCTTGAGGTGGTTGATCCTAAGCTGAATTCAGTTTATGATTTGGAAGAAGTGGAGTTGGTTCTGAAATTGGGTCTCCTCTGCAGTCACAACATAGCAGATTATAGACCTACCATGAAACAAGTTACAAGGTACTTGAACTTTGATGACCTTCTTCCTGATATTAGTGATTGGAGAAGGAGTGTTTCTGAAAGCAGCAGTCTGAGCTTAGGATTCTTAGAAGCCACTTCTATGATGAGTGTGGGAACATCAAAGAATTTGTCCTCCATAGATATCATGAGTACAAACTCCATAGATGCTGGTAGATAG 2025 0.4119 MASTLLCFLLFLPLLDHVSANSFLFEGFNNNSKLTLEGASVIKTSALLRLTDRSTNIVGHAFYKTPFKMLNKTNSSLQPNAYSFSTYFVFSIVSPRSGSGGFGLAFTIAPSTIFPGAEAGHFLGLVNSTSDGDSSNHILAVEFDTVNGYKEDSDTEGNHVGVNVNGMNSKITEPAAYIEAGTDSNVKEDFRMAKVDAVQAWIEYDSKRKTLNVTVAPLPLLRPNKPLISYPIELNTVFKENMYVGFSASTGSKETSFHYILGWSFSVNGDAPLLNNSELPNPPPKEQDPSSFPWVNLAIGTLCVLTFTLLCLLLYQTLCKRYMRFEALEDWEMDCPHRFRYKDLHTATKGFKESQLIGVGGFGAVYKGVLPTTGSEVAVKRIVRGPIHGMREFAAEIESLGRLRHKNLVNLQGWCKKKNDLLLIYDFIPNGSLDSILYNSNCNFVLDWGQRFKILKGITAGLLYLHEEWEQVVIHRDVKTSNILIDGDFNARLGDFGLARIYDHDQISHTTNVVGTIGYIAPELTRTGKSSTKSDVYAYGVVLLEVVTGKRPVSSDQFFLVDWVVENYQLGQILEVVDPKLNSVYDLEEVELVLKLGLLCSHNIADYRPTMKQVTRYLNFDDLLPDISDWRRSVSESSSLSLGFLEATSMMSVGTSKNLSSIDIMSTNSIDAGR* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3353 674 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 284 IPR013320 -
Lja1g3353 674 CDD lectin_legume_LecRK_Arcelin_ConA 22 269 IPR001220 GO:0030246
Lja1g3353 674 CDD STKc_IRAK 357 619 - -
Lja1g3353 674 Pfam Protein kinase domain 351 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3353 674 Pfam Legume lectin domain 21 279 IPR001220 GO:0030246
Lja1g3353 674 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 5 669 - -
Lja1g3353 674 ProSiteProfiles Protein kinase domain profile. 351 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3353 674 ProSitePatterns Legume lectins beta-chain signature. 139 145 IPR019825 -
Lja1g3353 674 Gene3D - 19 277 - -
Lja1g3353 674 Gene3D Phosphorylase Kinase; domain 1 336 427 - -
Lja1g3353 674 SUPERFAMILY Protein kinase-like (PK-like) 334 628 IPR011009 -
Lja1g3353 674 PANTHER - 5 669 - -
Lja1g3353 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Lja1g3353 674 Gene3D Transferase(Phosphotransferase) domain 1 428 627 - -
Lja1g3353 674 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
Lja1g3353 674 SMART serkin_6 351 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3353 Lja-Chr1 41769464 41771781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3353 23 643 Receptor kinase-like Gene Family AT5G01560 49.449 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja1g3353 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3353 - - lja:Lj1g3v2372440.1 1223.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3353 1 41769464 41771781 Lja1g3353 1 41769464 41771781 ECH
Lja3g3208 3 62021905 62024478 Lja1g3353 1 41769464 41771781 PCT