Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3352 ATGATGCAGTCAGAGATTCTTCATCAGTCCCCATGGTCATTCTATGAAGGCATGGACTCAATTTTTGATCAAGTTCTTGAGCCCTACCAATTATTCACCATGGATGACCATGTTGTTGGTGATTGTGTGTTCAACAGTACTATGTTGAGCACTCCACAGGATACTGTTTCTGAAGTTTTCTCCATCCCCTCTCCTTCCACCATATTTACCAATGATCTTATCCAATACCCAATTGATGAAGACACCCTGCAACTCCCATCACTGATGGAACTTGATGGTTTCGAATTTGATGCTAATTTGAGTTCCCAGATTGCAAATATTTTTGGCCATGGATACCCAGAAGAAAGTGAAGGGACTCATTTTCCGCAACCGCAATTTAAAACACTGGAAGAGAGCTTCCCTTTACAGGGCTCCCCCAGTGAGGTAGAAGATTCATGGAGTCCTCCCATGTCACTGAGATCAGAAATTTCCTTCTCCTCCTCAATTCAACAACCATCACTGAACTTGCCACAAGAAGGCATGGAAATTTGCAACCAAGTGAGCCTTCCACACCTGATGGAGGCCTATGTAGAAACCAAGGGTAAAGGACAAAATTCACTAGCAGAAGCGATCTTGAGGCGCATGAGCCAGAAAGTTAACCCGCGCGGTGATTCGCTTGAGCGCCTTGCATCATACTTGTCACAAGACATGACAAATCATGGAGATTATCTCAGAGGTGAGGCCTCCAAGAACTTTGGTGATGCTTTGAGGGTGTTCCATCAAGGAGTCCCACATAGAAAAATTGCTGACTTTGCAGCAATTTCAGCAATTCTTGAAGCTGTCCCAGAAGATTGTGATGGAATACACATAATTGACTTTTATTTAGGACATGGTGCTCAATGGGCTCCAATGATTGAGACAATTGCAAAATTTCACAAATCATTGAAATTGACATCAATCAGATTGGATGAGGAGAGCCCTGAATGTGTTTCCACTCCATTAAATTTTGAGGAAACTAGGAGGCAACTTTATGAACATGCCAAATCATGTGGTTTGAAGTTGAAGGTAGAGGAAAAGAGATTGGAAGAACTGGTTGGTGAGATTAAAAAGATGAAAAAAAAGGGTGGGAGGAGAGAGTTTTTAGCCTTCAATTGTATGGTGGGTCTATTGGATTTGAGCGATGCGAGACTTGTTTCACCATTACAATCAACGTCAACACAAGTGTGGAGGAAAAGAGAACAAGCCATGGAGTTTCTTAAGGTAGCTGAGGATTTGATCAACACCTCTGACTGCAAGGGAATTATCACTTCTGGTGATGGTGATGCATTTGAGAAAATGAAAAATAACTGTGATTTCAGGTCATTCATTGAAGGCCATTTAGTGCATTACCAGGCTTGGTTAGAATCAATTGAATCACACTTCACACCTCGTTTCTCTGAAGCAAGAACTGCAATTGAAGTGCTATTCGTGGCGCCTTGCGTCTCTTCTCTTAGTCTGTTACAATTACAAACATGGGAGGAAAAGAAAAAGGATTGGGATCTTCATCAGGAACAGATGATGAGCTTAGAGGGTTGCAGATTGAGCAATAACATATTACTGGAAGCCAGAGAAGTGTTGAATGGAAGTGAAGGTTCATATGAGGCCAGGATTGAAGGACAAAGTGGTAATGTTCTGGTTTTGGAATGGAAAGGCACCCAACTGCTAAGACTCTCAACTTGGAAAAACTAA 1707 0.42 MMQSEILHQSPWSFYEGMDSIFDQVLEPYQLFTMDDHVVGDCVFNSTMLSTPQDTVSEVFSIPSPSTIFTNDLIQYPIDEDTLQLPSLMELDGFEFDANLSSQIANIFGHGYPEESEGTHFPQPQFKTLEESFPLQGSPSEVEDSWSPPMSLRSEISFSSSIQQPSLNLPQEGMEICNQVSLPHLMEAYVETKGKGQNSLAEAILRRMSQKVNPRGDSLERLASYLSQDMTNHGDYLRGEASKNFGDALRVFHQGVPHRKIADFAAISAILEAVPEDCDGIHIIDFYLGHGAQWAPMIETIAKFHKSLKLTSIRLDEESPECVSTPLNFEETRRQLYEHAKSCGLKLKVEEKRLEELVGEIKKMKKKGGRREFLAFNCMVGLLDLSDARLVSPLQSTSTQVWRKREQAMEFLKVAEDLINTSDCKGIITSGDGDAFEKMKNNCDFRSFIEGHLVHYQAWLESIESHFTPRFSEARTAIEVLFVAPCVSSLSLLQLQTWEEKKKDWDLHQEQMMSLEGCRLSNNILLEAREVLNGSEGSYEARIEGQSGNVLVLEWKGTQLLRLSTWKN* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3352 568 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 30 567 - -
Lja1g3352 568 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 30 567 IPR005202 -
Lja1g3352 568 Coils Coil 347 367 - -
Lja1g3352 568 ProSiteProfiles GRAS family profile. 173 567 IPR005202 -
Lja1g3352 568 Pfam GRAS domain family 194 567 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3352 Lja-Chr1 41724870 41726842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3352 90 567 GRAS Transcription Factor Family AT3G60630 24.808 1.75e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja1g3352 GRAS 2e-32 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3352 - - gmx:100784347 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3352 1 41724870 41726842 Lja1g3352 1 41724870 41726842 ECH