LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g3347	ATGGTAGTTGACCCTTCTTGTTGTCTTTTGTTTAATCAGGCTAAAAAGAAAATTGAAGATGCTAAGCTTGCAAGAGATTTCCAAACCACGTTACAAGAATTTCAGAAAGTCAACAGCTTGCTTCTGAGCGTGAATCGACTTACACCCCGGCTTCCACTTCTTCTCCTTTACCAACAAGAGATACTTCTGTTGGATAATGAATTATCCTTCAATGAGGCTATGATTGATGAAAGAGATCAGGGTATCCGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGATCTTGTTGTTCTGGTTCATGATCAGGGGATTGTTATTGATGACATTCACTCAAATATCGATGCTTCTGCCGGTGCAACATCCCAAGCTAAGGTTCAGCTAGCCAAAGCTTCCAAAAGTGTGAAATCAAAAACTAAATGGTGTTGGTGGGTGCTTGTAATATTTGTGGCAGTGCTGGTCATCTTACTTCTTGTACTCATTCTTTAG	498	0.3976	MVVDPSCCLLFNQAKKKIEDAKLARDFQTTLQEFQKVNSLLLSVNRLTPRLPLLLLYQQEILLLDNELSFNEAMIDERDQGIREVEEQIGQANEIFKDLVVLVHDQGIVIDDIHSNIDASAGATSQAKVQLAKASKSVKSKTKWCWWVLVIFVAVLVILLLVLIL*	166

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g3347	165	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	72	134	IPR000727	-
	Lja1g3347	165	SMART	tSNARE_6	67	134	IPR000727	-
	Lja1g3347	165	Pfam	SNARE domain	109	160	IPR000727	-
	Lja1g3347	165	SUPERFAMILY	t-snare proteins	16	127	IPR010989	GO:0016020\|GO:0016192
	Lja1g3347	165	CDD	SNARE_Qa	75	133	-	-
	Lja1g3347	165	PANTHER	SYNTAXIN-22-LIKE	13	164	-	-
	Lja1g3347	165	Gene3D	-	65	165	-	-
	Lja1g3347	165	PANTHER	SYNTAXIN	13	164	IPR045242	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g3347	Lja-Chr1	41645759	41647064	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g3347	16	152	SNARE and Associated Proteins	AT5G46860	48.125	8.60e-42	139

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g3347	-		K08488	gmx:100787141	182.185

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