Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3347 ATGGTAGTTGACCCTTCTTGTTGTCTTTTGTTTAATCAGGCTAAAAAGAAAATTGAAGATGCTAAGCTTGCAAGAGATTTCCAAACCACGTTACAAGAATTTCAGAAAGTCAACAGCTTGCTTCTGAGCGTGAATCGACTTACACCCCGGCTTCCACTTCTTCTCCTTTACCAACAAGAGATACTTCTGTTGGATAATGAATTATCCTTCAATGAGGCTATGATTGATGAAAGAGATCAGGGTATCCGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGATCTTGTTGTTCTGGTTCATGATCAGGGGATTGTTATTGATGACATTCACTCAAATATCGATGCTTCTGCCGGTGCAACATCCCAAGCTAAGGTTCAGCTAGCCAAAGCTTCCAAAAGTGTGAAATCAAAAACTAAATGGTGTTGGTGGGTGCTTGTAATATTTGTGGCAGTGCTGGTCATCTTACTTCTTGTACTCATTCTTTAG 498 0.3976 MVVDPSCCLLFNQAKKKIEDAKLARDFQTTLQEFQKVNSLLLSVNRLTPRLPLLLLYQQEILLLDNELSFNEAMIDERDQGIREVEEQIGQANEIFKDLVVLVHDQGIVIDDIHSNIDASAGATSQAKVQLAKASKSVKSKTKWCWWVLVIFVAVLVILLLVLIL* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3347 165 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 72 134 IPR000727 -
Lja1g3347 165 SMART tSNARE_6 67 134 IPR000727 -
Lja1g3347 165 Pfam SNARE domain 109 160 IPR000727 -
Lja1g3347 165 SUPERFAMILY t-snare proteins 16 127 IPR010989 GO:0016020|GO:0016192
Lja1g3347 165 CDD SNARE_Qa 75 133 - -
Lja1g3347 165 PANTHER SYNTAXIN-22-LIKE 13 164 - -
Lja1g3347 165 Gene3D - 65 165 - -
Lja1g3347 165 PANTHER SYNTAXIN 13 164 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3347 Lja-Chr1 41645759 41647064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3347 16 152 SNARE and Associated Proteins AT5G46860 48.125 8.60e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3347 - K08488 gmx:100787141 182.185