Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3339 ATGGCAGTTCCAATACTGACATTTAGTTTCTTCAAAGTGATTCAGGATCACGAACAGAAAGAAGAGACCAGGATTCCCAAGTTTATTGCGATGAAATATTGGAAAGGATTATCAAACCCAGTCGTTTTTAGACTCCCAAGTGGTGATAAATGGAACATATTTTGGGAAAAACGTGATGATGGTATTTGGCTTCTGAAGAATTGGAAAGAATTTGCGCAGTTGTACTCGTTAAAGTTTGGATCCTTTTTAGTTTTCAAATATAAAGGAAGTTCATGCTTCAAGGTTAAAATATTTAATCCCAATACTTCAGAATATTGCAAATATGAGATTGAAGGGGCTAATAGAGGACGCATGGTTAGGAGATGCTCAAAAGCTGATGATGAAGCTATCAAAGAGGTGATATCCAGAAATTTTGATTCTGAAACTGAGAATCCCTTCTGTGTTGTTAGATTGAGTCAATCTTATGTCGAGCAGAATCAATTGATGATGCCATGTGAGTTTTCAAAAAAACACTTGTACCGGTTAGAAGGGAGTGCTACCGTTGTGGTTGGTGAAGACTTGACATCAACATGGGATGTTAGCTTCAAGTTTGAGTATGCTGGAAAAAGAACCCGAATATGCCACGGTTGGAAGTCATTTTGTCAGGATCACAACTTGAAAGTTGGTGATGCCTGCATTTTTGAAATGCTTAAACGTGACCCGGTTACATTCAAAGTTCACGTTCGATCAAGTTCTGAGCAGCAGTTGCAAGATTATTCGGGAAGTCCTGACATGGAACATGATAAATTTGAGATTACTGTAAAATCATATTACCCGAACATACCAAGAGAGTTCGTGAAGAGACATATCAAATGTCATGAAAATTATGTGGAGTTGAAAGTAGGGAAAAGGTCGTGGGATGTGAAAGTGTTAAAATTTGCTAATCACACTAGGTTTTGTGAAGGTTGGCGTGCATTTCAGAGAGAATGCAAATTGAATGATGGAGACATTTGTGTGTTTGAGTTGGCTAATGAGAAGAAACTTGAGTTCCAAGTTACAATAAAAAAAAGGCCACCAGCCCACCACTGA 1068 0.3811 MAVPILTFSFFKVIQDHEQKEETRIPKFIAMKYWKGLSNPVVFRLPSGDKWNIFWEKRDDGIWLLKNWKEFAQLYSLKFGSFLVFKYKGSSCFKVKIFNPNTSEYCKYEIEGANRGRMVRRCSKADDEAIKEVISRNFDSETENPFCVVRLSQSYVEQNQLMMPCEFSKKHLYRLEGSATVVVGEDLTSTWDVSFKFEYAGKRTRICHGWKSFCQDHNLKVGDACIFEMLKRDPVTFKVHVRSSSEQQLQDYSGSPDMEHDKFEITVKSYYPNIPREFVKRHIKCHENYVELKVGKRSWDVKVLKFANHTRFCEGWRAFQRECKLNDGDICVFELANEKKLEFQVTIKKRPPAHH* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3339 355 ProSiteProfiles B3 DNA-binding domain profile. 8 101 IPR003340 GO:0003677
Lja1g3339 355 CDD B3_DNA 8 99 IPR003340 GO:0003677
Lja1g3339 355 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 110 - -
Lja1g3339 355 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 115 242 - -
Lja1g3339 355 SUPERFAMILY DNA-binding pseudobarrel domain 142 246 IPR015300 -
Lja1g3339 355 ProSiteProfiles B3 DNA-binding domain profile. 146 245 IPR003340 GO:0003677
Lja1g3339 355 SUPERFAMILY DNA-binding pseudobarrel domain 9 101 IPR015300 -
Lja1g3339 355 SMART B3_2 263 351 IPR003340 GO:0003677
Lja1g3339 355 SMART B3_2 10 101 IPR003340 GO:0003677
Lja1g3339 355 SMART B3_2 146 245 IPR003340 GO:0003677
Lja1g3339 355 Pfam B3 DNA binding domain 274 350 IPR003340 GO:0003677
Lja1g3339 355 Pfam B3 DNA binding domain 147 244 IPR003340 GO:0003677
Lja1g3339 355 Pfam B3 DNA binding domain 10 99 IPR003340 GO:0003677
Lja1g3339 355 ProSiteProfiles B3 DNA-binding domain profile. 274 351 IPR003340 GO:0003677
Lja1g3339 355 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 268 348 - -
Lja1g3339 355 CDD B3_DNA 274 349 IPR003340 GO:0003677
Lja1g3339 355 CDD B3_DNA 145 243 IPR003340 GO:0003677
Lja1g3339 355 SUPERFAMILY DNA-binding pseudobarrel domain 266 347 IPR015300 -
Lja1g3339 355 Gene3D - 6 103 IPR015300 -
Lja1g3339 355 Gene3D - 125 247 IPR015300 -
Lja1g3339 355 Gene3D - 253 350 IPR015300 -
Lja1g3339 355 PANTHER B3 DOMAIN-CONTAINING 268 348 - -
Lja1g3339 355 PANTHER B3 DOMAIN-CONTAINING 7 110 - -
Lja1g3339 355 PANTHER B3 DOMAIN-CONTAINING 115 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3339 Lja-Chr1 41551956 41554717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3339 20 261 REM Transcription Factor Family AT4G31640 25.681 5.65e-17 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g3339 B3 8.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3339 - - lja:Lj0g3v0114559.1 362.844