Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3338 ATGGCAGCTCCAATGTCGGCATTGCCTAGCTTCTTCAAAGTGATTCATGATCAAGAGCAAAAAGAAGAAACCAGGATTCCCAAGTTTATTGCGATCAATTATTGGGAAGGATTATCAAACCCAATATTTCTTAGGGTTCCAAATGGTGGTAAATGGACAATGTTTTGGGAAAAACGTGATGATGGTATTTGGCTTCACAAGAATTGGAAAAACTTTGCAGAGTTGAACTCGTTAAGATTTGGATCACTTTTACTTTTTGATTATACTGGAAAATCACATTTCCAGGTTAGAATATTTAATCCTGATACTTCAGAATGCAAATATGATGACTGTGAAGGTAGTCATCATGAACAAGTTGAGAAGCGTAGTGAGTCTGCTGTGATTCTGGAAGAAAGGGCTGATAGCGGAGGCATGGTTAAGGCTAGTTGCTCAAAAGCTGAAGCTATCATGGAAATAACCAAAAAATTTGAGTCTGAGATTCAGAACCACTTCTGTGTTGTTATATTGACTACATCTTATGTCCAGCACCATCTATTGCCGTTGCCGACTGGTTTTTCAAGAAAGCACTTGTACGGGTTACATGGGATTGCTACCATTGGAATTGGTGAGGATTTGACATCAACATGGGAAGTGAACTTCAAGTTCGACTATTCTAGAGTAGGAACCCGATTATGCTATGGATGGAGGACATTCTGTCAAGATAATAACTTGCAAGCTGGTGATGCCTGCATATTTGAACTGCTTAAATGTGACCCGGTTACTTTCAAAGTTCACATTTCAGAATGCAAATATGACAATGAAGACAGTGAAACTAACAATATTGATCCATCTAAAAGAACAAACAACTATGGCAAGAAAAAAATCAAAGTGGATTTTGATAATGTTCCAAGAGAGTTCGTGAAGAGACATAGCAGATGTCTCGGAAATTATGTGAAGTTGAGAGTAGGGGAAAGATGGTGGGATGTGAAAGTGTTAAAATATGCGAATCACACTAGGATTTGTGAAGGTTGGGGTGCATTTAAGAGAGAATGCAAATTGAATATTGATGACATTTGCGTGTTTGAGTTGGTTGATGAGGAAAAACTTGAGTTCAAAGTTTCAATTATTTCTAGAAGCCACCACTGA 1125 0.3804 MAAPMSALPSFFKVIHDQEQKEETRIPKFIAINYWEGLSNPIFLRVPNGGKWTMFWEKRDDGIWLHKNWKNFAELNSLRFGSLLLFDYTGKSHFQVRIFNPDTSECKYDDCEGSHHEQVEKRSESAVILEERADSGGMVKASCSKAEAIMEITKKFESEIQNHFCVVILTTSYVQHHLLPLPTGFSRKHLYGLHGIATIGIGEDLTSTWEVNFKFDYSRVGTRLCYGWRTFCQDNNLQAGDACIFELLKCDPVTFKVHISECKYDNEDSETNNIDPSKRTNNYGKKKIKVDFDNVPREFVKRHSRCLGNYVKLRVGERWWDVKVLKYANHTRICEGWGAFKRECKLNIDDICVFELVDEEKLEFKVSIISRSHH* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3338 374 SUPERFAMILY DNA-binding pseudobarrel domain 292 371 IPR015300 -
Lja1g3338 374 ProSiteProfiles B3 DNA-binding domain profile. 295 372 IPR003340 GO:0003677
Lja1g3338 374 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 141 261 - -
Lja1g3338 374 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 290 369 - -
Lja1g3338 374 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 124 - -
Lja1g3338 374 SMART B3_2 165 263 IPR003340 GO:0003677
Lja1g3338 374 SMART B3_2 283 372 IPR003340 GO:0003677
Lja1g3338 374 SMART B3_2 11 102 IPR003340 GO:0003677
Lja1g3338 374 CDD B3_DNA 9 100 IPR003340 GO:0003677
Lja1g3338 374 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Lja1g3338 374 PANTHER B3 DOMAIN-CONTAINING 7 124 - -
Lja1g3338 374 SUPERFAMILY DNA-binding pseudobarrel domain 8 102 IPR015300 -
Lja1g3338 374 ProSiteProfiles B3 DNA-binding domain profile. 164 263 IPR003340 GO:0003677
Lja1g3338 374 CDD B3_DNA 163 259 IPR003340 GO:0003677
Lja1g3338 374 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Lja1g3338 374 Pfam B3 DNA binding domain 295 371 IPR003340 GO:0003677
Lja1g3338 374 Pfam B3 DNA binding domain 164 259 IPR003340 GO:0003677
Lja1g3338 374 Gene3D - 5 104 IPR015300 -
Lja1g3338 374 PANTHER B3 DOMAIN-CONTAINING 141 261 - -
Lja1g3338 374 PANTHER B3 DOMAIN-CONTAINING 290 369 - -
Lja1g3338 374 SUPERFAMILY DNA-binding pseudobarrel domain 158 261 IPR015300 -
Lja1g3338 374 CDD B3_DNA 295 370 IPR003340 GO:0003677
Lja1g3338 374 Gene3D - 142 264 IPR015300 -
Lja1g3338 374 Gene3D - 273 373 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3338 Lja-Chr1 41526931 41539319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3338 9 357 REM Transcription Factor Family AT1G26680 23.810 2.54e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja1g3338 B3 1.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3338 - - lja:Lj0g3v0114559.1 399.053