Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3337 ATGCACTTCACTCTCTTCATCCTCCTTTTCTTCTTCCACTTCCACCGGACTGTTTCACTTACCTCCGACGGCCTCGCCCTTCTCACTCTAAAATCCGCCGTCGACGGCGTCAGCGCCGCCGCATTCTCCGACTGGAACGATGCCGACGCAAATCCCTGCCGGTGGTCCGGCATCAGCTGCGGCAACATCTCCGGTGACTCTGACCCCCGCGTCGTCGGCGTCGCCCTCGCCGGCAAGGGCCTCCGCGGCTATCTCCCGTCGGAGCTTGGCAACCTCCTCTACCTCCGCCGCCTGAGCCTCCACACCAACGCCTTCCACGGCTCCATCCCCTCCCAGCTCTTCAACGCCGCCGCGCTCCACAGCGTCTTCCTCCACGGTAACAACCTCTCCGGCGAACTTCCACCTTCCGTCTTCGACCTCCCTCACCTCCAGAATCTTGACCTCTCCGACAACTCCCTCTCTGGCAACATCCCAAACTCCCTCTCCAACTGCTCCCAGCTCCAGCGGCTCGTCCTCGCCCGCAACAAATTCTCCGGTGAGATCCCGGCGACTCCCTGGCCGGCGCTGAAGATCCTCGTCCAGCTCGACCTCTCCGGGAACCATCTCAAAGGTCCGATCCCGGACCAAATCGGTGACCTCACCTCCCTCGCCGGAACCCTAAACCTCTCCTTCAACCACCTAACCGGTAAACTCCCAAATTCCCTCGGGAAATTGCCTGTATCCGTGAGCTTCGATCTTCGCAACAACGACCTCGCCGGCGAGATCCCTCAAACGGGGTCGTTTTCGAATCAGGGACCCACCGCATTCCTCAACAACCCGAACCTCTGCGGGTTCCCTCTGCAGAAACCCTGCAGCGGTTCAGCGCCGAGCGAACCGGGCGCGAATCCCGGTGCGTCTCGGCCAACCGGGAAGCGGTCCAGCAAGGGATTGAGCCCTGGCTTGATTATTCTGATTACAGTTGCTGATGCTGCTGTTGTGGCTTTGATTGGGCTTGTAGTGGTTTATATTTATTGGAAGAAGAAGGACAAGTCCAATGGGTGTAGTTGCACTGGAAAAAGCAAGTTTGGTAGTAGTGGTAATGGGGAAGATGAGAAATCAAGGTTGTGTTGTTTTTGTGGGTCTTTGAATGGGTTCAGGAGTGATGATTCTGAAATGGAGGAGGGTGAGAAAGGGGGAGAGGATGAGAGAGTTGAAGGGGAGGGGGGGCATTTGGTGGCAATTGATAAGGGCTTCAACTTTGAGCTTGATGAGCTTTTAAGAGCTTCTGCTTATGTGTTGGGGAAGAGTGGGTTGGGGATTGTGTATAAAGTTGTGCTAGGGAATGGGGTGCCTGTGGCTGTGAGGAGATTAGGGGAGGGTGGGGAACAGAGGTATAAGGAGTTTGCTGCTGAGGTTCAAGCTATTGGGAAAGTGAAACACCCTAACATTGTTAAGTTGAGAGCTTATTATTGGGCTCCTGATGAGAAGCTTTTGATCAGTGATTTCATCTCGAATGGCAATTTGGCCACTGCCCTTAGAGGGAGAAATGGCCAACCATCTCCAAATCTTTCATGGTCAACCAGGCTGAGAATAGCCAAAGGAACAGCAAGGGGTTTGGCATACCTCCATGAATGCAGTCCAAGAAAATTTGTTCATGGCGACATCAAACCCTCCAATATCCTGCTTGACACAGACTTCCAACCCCATCTTTCCGATTTCGGTCTCAACCGGCTGATCAGCATCACCGGAAATAACCCCTCCTCAGGCGGCTTCATGGGCGCAGCTCTTCCTTACATAAAGTCCTCACAAACAGAGCGAACTAACAACTACAAAGCCCCTGAAGCTCGAGTCCCGGGCTGCAGACCCACCCAGAAATGGGATGTGTATTCATTTGGAGTTGTATTGCTCGAATTGCTCACTGGGAAGTCCCCGGATTCTTCTCCCGCAGCATCGACTTCCATGGAAGTCCCTGACTTGGTGAGGTGGGTAAGGAAAGGGTTTGAGCTAGAAAGCCCTTTGTCTGAAATGGTTGATCCATCGCTTCTCCAAGAAGTTCATGCCAAGAAAGAGGTACTAGCTGTGTTTCACGTAGCAATGTCATGCACAGAAGGAGACCCTGAGGTTCGTCCTAAAATGAAAGCTGTCTCTGAAAATCTTGAAAGAATTTGA 2148 0.5345 MHFTLFILLFFFHFHRTVSLTSDGLALLTLKSAVDGVSAAAFSDWNDADANPCRWSGISCGNISGDSDPRVVGVALAGKGLRGYLPSELGNLLYLRRLSLHTNAFHGSIPSQLFNAAALHSVFLHGNNLSGELPPSVFDLPHLQNLDLSDNSLSGNIPNSLSNCSQLQRLVLARNKFSGEIPATPWPALKILVQLDLSGNHLKGPIPDQIGDLTSLAGTLNLSFNHLTGKLPNSLGKLPVSVSFDLRNNDLAGEIPQTGSFSNQGPTAFLNNPNLCGFPLQKPCSGSAPSEPGANPGASRPTGKRSSKGLSPGLIILITVADAAVVALIGLVVVYIYWKKKDKSNGCSCTGKSKFGSSGNGEDEKSRLCCFCGSLNGFRSDDSEMEEGEKGGEDERVEGEGGHLVAIDKGFNFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVKLRAYYWAPDEKLLISDFISNGNLATALRGRNGQPSPNLSWSTRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDTDFQPHLSDFGLNRLISITGNNPSSGGFMGAALPYIKSSQTERTNNYKAPEARVPGCRPTQKWDVYSFGVVLLELLTGKSPDSSPAASTSMEVPDLVRWVRKGFELESPLSEMVDPSLLQEVHAKKEVLAVFHVAMSCTEGDPEVRPKMKAVSENLERI* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3337 715 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Lja1g3337 715 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 3 715 - -
Lja1g3337 715 MobiDBLite consensus disorder prediction 286 307 - -
Lja1g3337 715 Pfam Leucine Rich Repeat 219 238 IPR001611 GO:0005515
Lja1g3337 715 SMART serkin_6 424 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3337 715 SUPERFAMILY L domain-like 22 281 - -
Lja1g3337 715 Gene3D Phosphorylase Kinase; domain 1 409 495 - -
Lja1g3337 715 Pfam DNA binding protein S1FA 306 340 IPR006779 GO:0003677|GO:0005634|GO:0006355
Lja1g3337 715 CDD STKc_IRAK 426 715 - -
Lja1g3337 715 Pfam Leucine rich repeat 119 177 IPR001611 GO:0005515
Lja1g3337 715 SUPERFAMILY Protein kinase-like (PK-like) 425 712 IPR011009 -
Lja1g3337 715 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 715 - -
Lja1g3337 715 ProSiteProfiles Leucine-rich repeat profile. 142 164 IPR001611 GO:0005515
Lja1g3337 715 Pfam Protein kinase domain 425 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3337 715 Gene3D Ribonuclease Inhibitor 21 185 IPR032675 -
Lja1g3337 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Lja1g3337 715 Gene3D Ribonuclease Inhibitor 186 286 IPR032675 -
Lja1g3337 715 Gene3D Transferase(Phosphotransferase) domain 1 496 715 - -
Lja1g3337 715 ProSiteProfiles Protein kinase domain profile. 420 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3337 Lja-Chr1 41494542 41498863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3337 17 715 Receptor kinase-like Gene Family AT1G67510 68.811 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja1g3337 Pkinase 1.7e-32 CL0016
TF S1Fa-like Lja1g3337 Pkinase 1.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3337 - - gmx:100795021 1148.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3337 1 41494542 41498863 Lja3g3374 3 66507287 66510723 PCT