Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3335 ATGAAGACTGATATTATTTCTGGAGATAGGAGATCACGCAAGAGGCGCGTTGGTGGAAGAGTTGATTCAGTGGAAGACACACTTGAGAAGTGGAAGAAGTACAACAAGCAGCAAGAGCTTGGTGTTGGAGAGGATGGGGTGGAAAAGATTCACAAAGTTCCCGCGAAGGGCTCGAGAAAGGGGTGCATGAGAGGTAAAGGCGGGCCTCAGAACTCTGATTGCAAGTTCAGGGGCGTGAGGCAGAGGATTTGGGGGAAGTGGGTTGCTGAGATTCGCGAACCGATCAACGGGAAACATGCAGGTGAGAAGGCGAATCGGCTCTGGCTTGGTACTTTCTCTACAGCTCATGAAGCTGCTCTTGCTTATGATGAAGCAGCTAAGGCCATGTATGGCCCTTGTGCCCGGTTGAATTTTCCGGAGTCAAGGCCTAATGGATCATCATCACCAAGTGGCTCTTCAGACACTTTGAGTGGTGGTGGTGATCTTGCAAAAGCTGTGGAATTGGAGGGGAATCTTCATCAGTCAAGTGGAGAAAAACTCAGATTTTCTGCTGTTGGAGTGTTTGATGAAAGTGCTGAGAGAATGGTTCCTTCTGAAGCTTGTGTGTTTGATGACTCGGTTGAGGACTCGAAGGAAGTGACGAATGATGATTTCCAATGTCGAACAAATGAGAACTGTAAGAGTATAACTCAGCAAGGGTCTCTCAAGAATGCTAAGTATGAAATTTCTAGAGATAATGATGGAAAAAAGAAGGAATCAGAGGTGAATTTGAATAACTATGTCTGGAAAAATTTGCAGGAGGGGCCTGTGGTTGTAGCCATGAATTCAAGAGCTGGTTATAGATCATGTGATGCTACTGAACATGAGATTCTGGTGAAGAGTGAAGGAACCAAAGGAGAATCAGTGGAGCCTTTGAATTCCCTTGAGTTGAGCTGCAATTACCACCACCTGCATAATATGCTGCCAGAGAGAGATCTAAGACCAAATTCTGAGCATTTTAACAGCATCCAATGCGAGCCGATTGCGAAGAAACACTGGAAGGAAGTGATTTCTGAAATCCTGGAACTTTGTTGCAGCAGCAATAACTCAAAGATAAGCCATGTTCAGTCACAAAATGAGCCTTGTAAAAATGAAAGTTTTGATGAGATGAAGACCGGGCTTAAGGGTTTGGAGTGCAAGATGAGAGTCCATTCTATTGGTTTCAAGAATGAGGCACCAATTATGGAAGATTCCAATCATTCCATACAGAGAATTCCTCTGTTTGGTGGCGGTGGCGCCACTGTTGGATTAAATGAGAGAATGTCTCAAGCTGAGGATTTGAGCACCAAAACTCATAGAATCTCAAGGTTGCAAGAGAAAGGAAATTATGGAAATGCACTGCCCGGATTTAGTTCCGGGCAGGGTAGGAAGCTGTGTGATTTTTCTCAACATCTTCAGAAATTGGGTGAACATTGGAATAATAAGCAGTTTGCAGACATGGAAGTGAGTTATGATTATAGTTTCTTAAGTCCTGATTATGATTTTGGCTTATTGGAGGAGAAGAAGTTACTAGATGTGTGTTTTTCACATCTAGGATCTTAG 1581 0.4377 MKTDIISGDRRSRKRRVGGRVDSVEDTLEKWKKYNKQQELGVGEDGVEKIHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKHAGEKANRLWLGTFSTAHEAALAYDEAAKAMYGPCARLNFPESRPNGSSSPSGSSDTLSGGGDLAKAVELEGNLHQSSGEKLRFSAVGVFDESAERMVPSEACVFDDSVEDSKEVTNDDFQCRTNENCKSITQQGSLKNAKYEISRDNDGKKKESEVNLNNYVWKNLQEGPVVVAMNSRAGYRSCDATEHEILVKSEGTKGESVEPLNSLELSCNYHHLHNMLPERDLRPNSEHFNSIQCEPIAKKHWKEVISEILELCCSSNNSKISHVQSQNEPCKNESFDEMKTGLKGLECKMRVHSIGFKNEAPIMEDSNHSIQRIPLFGGGGATVGLNERMSQAEDLSTKTHRISRLQEKGNYGNALPGFSSGQGRKLCDFSQHLQKLGEHWNNKQFADMEVSYDYSFLSPDYDFGLLEEKKLLDVCFSHLGS* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3335 526 MobiDBLite consensus disorder prediction 140 157 - -
Lja1g3335 526 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 393 - -
Lja1g3335 526 MobiDBLite consensus disorder prediction 140 161 - -
Lja1g3335 526 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 393 - -
Lja1g3335 526 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g3335 526 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Lja1g3335 526 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Lja1g3335 526 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Lja1g3335 526 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Lja1g3335 526 SUPERFAMILY DNA-binding domain 75 140 IPR016177 GO:0003677
Lja1g3335 526 CDD AP2 74 141 IPR001471 GO:0003700|GO:0006355
Lja1g3335 526 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
Lja1g3335 526 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3335 Lja-Chr1 41480479 41482484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3335 13 158 AP2-EREBP Transcription Factor Family AT2G40340 56.081 5.66e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g3335 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3335 - - aprc:113861479 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3335 1 41480479 41482484 Lja1g3335 1 41480479 41482484 ECH