Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3333 ATGGGGAAGAAGCCGAAGCAAAAGATCATTCTTCCGCCGGAACTCCCGCCGGAGATTCCAGACGACGAAGTTGAGATTTCCGATGATGACCTCCAATTCGTCAAGGACAACCGCGCCTTTGCCTCCTTGCTTTCCACCTTGGACACCCAATCAATCACCAGGCATGTTACACGGGTTGCTGATGCTAAAGATGATGCGTTGGAGAAACTTTATGAGCAGCGCATGCAAAAGACTGCTCTCAAGAAAGAGAAAGAGGAAACAGGTTTGCAGGTTGATCGTGTAGACGCTCTTCCAATCAAGACCTTGGATGGGAAACTCTATTACCGAACAGCTACAAATAGGGTATCAGAAAATGGTCCAAATGAAGAGGAAGCTGGAGAGGATGAAAATGTTGACAAAGGTCTAGTGAAGCTAACTAAGGCTGAAAAGAGAGCCAAGCTTAAGAAAATGAGGAAAGAGGAGAAAAAACATGGGAAGGAGGTGCCTAAAGCAGAAGTGGAAGAAACACCACAAGCAGCAGTACTGGCTGAGGTTAAAGAAGATCTTGAAGCTGAGGAGACATTTGAAACTAAAAAGTGTAAACTTGCAGAATTGGGAAATGCCTTGCTTACAGACCCAGAGTCCAATATTAAATTTCTGAAGGAGATGGTACAGATTTCAAAGGATAATGACCATACAATTGTTAAACTTGGACTTCTATCCCTCTTGGCTGTTTTCAAAGATATTGTCCCTGGCTATCGGATAAGGCTTCCTACTGAAAAGGAACAAGAAATGAAGGTTTCAAAGACTGTTAGAAAGATGCGTTATTATGAATCAACTCTTCTTTCTTCATACAAGGTATACTTACAAAGGCTGATAGCCTTAGAAAAGAAGCCCTTGTTTCAGCTTGTTGCAATTCGTTGCATGTGTTCTTTGCTTGATGCAAATCCCCATTTCAACTTTCGTGAAGGCTTATTGGAGGCTACTGTCAGAAACATAAGCTCCAGTGATGAGGCCATAAGGAAACTTTGTTGTTCAACGATCAAGTCTCTCTTTACAAATGAGGGTAAACATGGCGGTGAAGCTACTGTGGAAGCAGTTCGATTGATTTCTGAGCATGTTAAAGCTCATAATTGCCAGATGCACCCTGATTCTGTTGAGGTTTTCTTGTCTCTTTCATTTGATGAGGATCTTGGGAAGTCTGAAAAGAAAGATGAGGATCAGAAATTCAAAAAGAAGAAAGGCTGGAAAAGAAAAAACATGGAGCCATCAAATCAGTTGCCTGAAAATGACAGAAAGAGAAGTAGGAAAGATTCGATTTCTAAGACAAAAGAGGAGATTGAAGCTGAGTACAAGGCTGCATCCCTTACCACAGATGTTATGGAGAGGAGACAGATGCAAACTGAAACACTCTCTGCTGTGTTCGAGACATATTTTCGCATTTTGAAGCACACGATGCATTCTGTAGTTGCCAGGCCTGAAGAAAATCCTGATGCATTATCTGCTGGAGTGGAACCCCACCCATTGCTTGCTCCATGCCTGAAAGGACTGGCAAAATTTTCACACCTGCTGGACCTTGATTTTATGGGTGATCTAATGAACCATCTGAAAGTTCTTGCTTCTGGAAGTAGCAACTCAGGCAATACTTCTGAAAAGTGTCCTAAATGTTTGAGCGTATCCGAGCGTCTCCAATGTTGCATTGTTGCTTTTAAAGTGATGAGGATCAATCTTGAGGCCTTGAATGTTGATTTACAGGACTTCTTGGTCCATCTTTACAATCTCATAGTTGAATACAGGCCAGGAAGAGATCAAGGGGAGGTGTTAGCTGAAGCTTTGAAGATAATGTTGTGTGATGATAGGCAACAGGACATGCAAAAGGCAGCTGCATTTATAAAACGTTTAGCCACATTGTCATTGTGTGTTGGTTCTGCAGATTCCATGGCTGCCTTGGTAACAGTGAAGCATCTCCTTCAGAAGAATGTTAAGTGCAGAAATCTGTTGGAAAATGACATTGGAGGGGGCTCTGTTTCTGGCACAATTTCAAAATATCAACCATACTCCACAGATCCTAACTTAAGCGGCGCCCTTGCTTCAGTACTGTGGGAACTCAGTCTTCTATCCAAGCATTATCATCCATCCATATCAACAATGGCGTCTGGCATTTCAAGCATGAGCTCTGCACAGAACCAAGTCCTTTACACCAGGTCCTCTCCTCAACAAGCTCTTACGGAAATGTCTCTGGACCAGGAATTGTGTTTCACACAAATTAGCAGTATAAAATTAAATAACAAAAAGCGACGGACAAATGGCCCTGCCGCATCAACTTCCACTGGTTCAACAACAGCAACGACTCCACTGAATGATGATGAGTTGCGAAAGAAACTTAGTTCCCATTTCATGGTTCTTCATGATATCAAGGAGAATGAAAAGTTGAGGAGTAAGTTGGATAGGACAACGCGATCACTGCAGCTATATGAGCAGTATAAGAAACAAAAGAAGCAACGATCAAAACCAACTAGATTATCAGCCATTGCTTAG 2517 0.4227 MGKKPKQKIILPPELPPEIPDDEVEISDDDLQFVKDNRAFASLLSTLDTQSITRHVTRVADAKDDALEKLYEQRMQKTALKKEKEETGLQVDRVDALPIKTLDGKLYYRTATNRVSENGPNEEEAGEDENVDKGLVKLTKAEKRAKLKKMRKEEKKHGKEVPKAEVEETPQAAVLAEVKEDLEAEETFETKKCKLAELGNALLTDPESNIKFLKEMVQISKDNDHTIVKLGLLSLLAVFKDIVPGYRIRLPTEKEQEMKVSKTVRKMRYYESTLLSSYKVYLQRLIALEKKPLFQLVAIRCMCSLLDANPHFNFREGLLEATVRNISSSDEAIRKLCCSTIKSLFTNEGKHGGEATVEAVRLISEHVKAHNCQMHPDSVEVFLSLSFDEDLGKSEKKDEDQKFKKKKGWKRKNMEPSNQLPENDRKRSRKDSISKTKEEIEAEYKAASLTTDVMERRQMQTETLSAVFETYFRILKHTMHSVVARPEENPDALSAGVEPHPLLAPCLKGLAKFSHLLDLDFMGDLMNHLKVLASGSSNSGNTSEKCPKCLSVSERLQCCIVAFKVMRINLEALNVDLQDFLVHLYNLIVEYRPGRDQGEVLAEALKIMLCDDRQQDMQKAAAFIKRLATLSLCVGSADSMAALVTVKHLLQKNVKCRNLLENDIGGGSVSGTISKYQPYSTDPNLSGALASVLWELSLLSKHYHPSISTMASGISSMSSAQNQVLYTRSSPQQALTEMSLDQELCFTQISSIKLNNKKRRTNGPAASTSTGSTTATTPLNDDELRKKLSSHFMVLHDIKENEKLRSKLDRTTRSLQLYEQYKKQKKQRSKPTRLSAIA* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3333 838 Coils Coil 423 443 - -
Lja1g3333 838 MobiDBLite consensus disorder prediction 417 437 - -
Lja1g3333 838 SUPERFAMILY ARM repeat 206 648 IPR016024 -
Lja1g3333 838 Pfam CBF/Mak21 family 556 711 IPR005612 -
Lja1g3333 838 Coils Coil 67 87 - -
Lja1g3333 838 MobiDBLite consensus disorder prediction 146 167 - -
Lja1g3333 838 Pfam Nucleolar complex-associated protein 191 281 IPR011501 -
Lja1g3333 838 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g3333 838 MobiDBLite consensus disorder prediction 756 779 - -
Lja1g3333 838 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 4 792 IPR016903 -
Lja1g3333 838 PIRSF Noc3 1 812 IPR016903 -
Lja1g3333 838 MobiDBLite consensus disorder prediction 756 781 - -
Lja1g3333 838 MobiDBLite consensus disorder prediction 396 437 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3333 1 808 Core DNA Replication Machinery Family AT1G79150 58.435 0.0 912
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3333 K14834 - gmx:100776136 1249.57