Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3323 ATGGGTGGCTGTTGCAGTTGCAGCCACGATGTTTCAGTTCGGGGCAAGGTGGAAAGCGAGGTGGATGATGGGGAATATGAGTATGAATCTCATGAGAATGTTGATGATGTTACGTATCAACGTGATGGAGCAACGATCAGGCTTAGGGGATCCTCTAAGTTTGCATCAATGTACTGCCAACAGGGTAAGAAAGGTGTGAACCAAGATGCAATGACTGTTTGGGAGGACTATACCGGAGAACAAGATATGATCTTTTGTGGCGTGTTCGACGGTCATGGTCCTCTCGGGCACAAGGTTTCGCAATTCATCCGTGACAATCTACCCTCAAAACTGTCTGAAGCAATCAAAATGTCACAACAGAAGACCTGCAAATACTATGATGCTCATGATACAGACACTGCCAGTTTCGATGACGTCTACGACGATGATAATAACATCAACATGTCCCTTGCTTCATGGGAGGGATGCTTTCTGAAATCCTTTGATGAGATGGATGATCACCTTGCTCAGGAAATCAACACTGACAGCTATTGCAGTGGTTGCACAGCTGTAACTGTAATTAAACAGGGTGATCAGCTGATAGTTAGCAATTTGGGTGATTCTCGCGCAGTTCTTTGCACAAGGGAAAGAGACCAACTTGTTCCTGTTCAACTTACTGTTGACTTGAAACCAGATCTTCCAGGTGAAGCCTCAAGAATCATGAGCTGTGAAGGCAGAGTTTTCGCAGCAGATGAAGAACCGGATGTTTACAGAATTTGGATGCCGGATGATGACTGCCCTGGACTAGCTATGTCAAGAGCCTTTGGAGATTTCTGCCTTAAAGATTATGGCCTCATTGCAGTTCCTGAAATATTCTATAGAAAAATCACCAAGCAAGATGAGTTTGTGGTTTTGGCAACTGATGGGGTATGGGATGTGCTTACTAATAGTGAAGTAATAAACATAGTTGCTTCAGCACCAAGGAGGTCCATCGCGGCCAAATTGTTAGTAAAACGCGCTGTTAGAGCCTGGAGGTACAAGTATCCTGGCTCCAAGGTTGATGACTGTGCAGCCGTATGCTTGTTTCTTGATGATCAGCCTTTGTTATCCCATTCCCAGTCCAGTATGTGTCGAAAAAGTCGGCATCGTAGCAAGCACCTGCATAGAAATGAAGATACTGAAACTGTGGATGGCAAGGTTGGAGTGGAACTGGATGAAGAATGGAAAGCTCTTGGAGGGCTAGTCAGAGCCAACTCCATGTCGAAACTTCCGCGCCTCGCTAGGGATGTGAGTAGAAGGCAATCATCTAAGCACCTAAAGGGAAGTTGA 1308 0.4541 MGGCCSCSHDVSVRGKVESEVDDGEYEYESHENVDDVTYQRDGATIRLRGSSKFASMYCQQGKKGVNQDAMTVWEDYTGEQDMIFCGVFDGHGPLGHKVSQFIRDNLPSKLSEAIKMSQQKTCKYYDAHDTDTASFDDVYDDDNNINMSLASWEGCFLKSFDEMDDHLAQEINTDSYCSGCTAVTVIKQGDQLIVSNLGDSRAVLCTRERDQLVPVQLTVDLKPDLPGEASRIMSCEGRVFAADEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLIAVPEIFYRKITKQDEFVVLATDGVWDVLTNSEVINIVASAPRRSIAAKLLVKRAVRAWRYKYPGSKVDDCAAVCLFLDDQPLLSHSQSSMCRKSRHRSKHLHRNEDTETVDGKVGVELDEEWKALGGLVRANSMSKLPRLARDVSRRQSSKHLKGS* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3323 435 SMART PP2C_4 45 354 IPR001932 -
Lja1g3323 435 Pfam Protein phosphatase 2C 79 333 IPR001932 -
Lja1g3323 435 SUPERFAMILY PP2C-like 50 358 IPR036457 -
Lja1g3323 435 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 1 413 - -
Lja1g3323 435 ProSiteProfiles PPM-type phosphatase domain profile. 54 356 IPR001932 -
Lja1g3323 435 CDD PP2Cc 54 356 IPR001932 -
Lja1g3323 435 Gene3D - 47 358 IPR036457 -
Lja1g3323 435 PANTHER ALPHABET, ISOFORM E-RELATED 1 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3323 Lja-Chr1 41330821 41334237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3323 1 360 PP2C-type Phosphatase Gene Family AT5G01700 52.778 4.38e-133 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3323 - - gmx:100783603 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3323 1 41330821 41334237 Lja1g3323 1 41330821 41334237 ECH
Lja1g3323 1 41330821 41334237 Lja3g3388 3 66803536 66805189 PCT