Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3314 ATGAGGACACCATCTTCTTTCACTAACATGCTATCAAACAACAGTAACATGACCATGGATGATCTTAATAACTGGGGTACTTCTGAAACTAATCATCAAGTTCCCAAATTCAACTCTGTTCAACCTCCCTCACCAACTTCTCCTTCTTCTTACTTGGCTTTTAGCCCAACTGAGTTCTTCAATTCACCTCTGTTTTCTCCAAATATTTTTGCATCTGCTGCTACTGAGAGTTTTACTGGTGAAAAGGAGGATGGGAAAAACTACTCTGACTTCTCTTTCCACACGCAAACAGAGCCTTCATCTGGCTTCCAATCTCCCTCAAGCATGTTTCAAGAGGAACCCCCAAAGAAACAAGACTTATGGAAATTCAATGAACCTATAAAGCAAACTGGTTTTTCAAGTGAATGTATAGCAACAAAAGCAGAATACCATTTACAAACTCAGAGCTTTTCCTCAGAAATGTTACCATGCAAACCAGAAATGCATAGCAATTCAATTCCTGGGTCTCATTATTCCAACTCCACGAATGCACCTCAGTCTGTTAGAGAACAACGGAGATCAGAAGACGGGTTCAATTGGAGAAAATATGGGCAAAAACAAGTAAAAGGTAGCGAAAATCCACGCAGTTATTACAAATGCACGCATCCAAGTTGCTCAATGAGGAAGAAAGTTGAGAGGTCTTTGGATGGAGAAATTACTGAAATAGTCTATAAGGGAAGTCATAACCACCCCAAGCCCCAGTCTACGAGAAGAACAAGCTCTCAACAATTTCATCAACCCTCTTCTTCATGCACCAACTCAGTTATTTCTGATATACAAGAAGATTCTTCAGCATCTGTAGGAGAGGAAGACTTTGCGGCGCAAACATCACAAACTAGTTATTCTGGAGGAAATGATGATGATTTTGGACCAGAGGCCAAAAGATGGAAGGGAGATAATGAAAATGATAGCTATTCTGCCTCAGAGAGTAGAACTGTTAAGGAACCTAGAGTTGTTGTTCAAACTAGAAGTGAAATTGATATACTTGATGATGGCTATAGGTGGAGGAAATATGGGCAGAAAGTAGTTAAGGGAAACCCAAATGCAAGGAGCTATTACAAATGCACAGCCCAAGGTTGTTCAGTGAGAAAACACGTTGAGAGAGCCGCACATGATATCAAATCTGTTATCACAACTTATGAAGGGAAGCACAACCATGATGTACCTGCTGCACGCGGTAGTGCAGGTTATAACATGAACAGAAATTCTCTGAACAGCACCGTATCAGCACCTATAAAGCCCTCAGTGGTGAGCTGTTATAATAATAGTGCATCTAGCTTCACAAATTCAGTTTATAAGACTAAGCTTCCAGAAAATGGAAATCAAGAATCATATCCACAGAACATATTGCAGAGTCCTGGAAGCTTTGGGAGGGATAGCTCATTCCTTCAGTCATTTCTATCAAAGGGTTTCTAA 1455 0.4034 MRTPSSFTNMLSNNSNMTMDDLNNWGTSETNHQVPKFNSVQPPSPTSPSSYLAFSPTEFFNSPLFSPNIFASAATESFTGEKEDGKNYSDFSFHTQTEPSSGFQSPSSMFQEEPPKKQDLWKFNEPIKQTGFSSECIATKAEYHLQTQSFSSEMLPCKPEMHSNSIPGSHYSNSTNAPQSVREQRRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPSCSMRKKVERSLDGEITEIVYKGSHNHPKPQSTRRTSSQQFHQPSSSCTNSVISDIQEDSSASVGEEDFAAQTSQTSYSGGNDDDFGPEAKRWKGDNENDSYSASESRTVKEPRVVVQTRSEIDILDDGYRWRKYGQKVVKGNPNARSYYKCTAQGCSVRKHVERAAHDIKSVITTYEGKHNHDVPAARGSAGYNMNRNSLNSTVSAPIKPSVVSCYNNSASSFTNSVYKTKLPENGNQESYPQNILQSPGSFGRDSSFLQSFLSKGF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3314 484 Pfam WRKY DNA -binding domain 188 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3314 484 Pfam WRKY DNA -binding domain 343 399 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3314 484 MobiDBLite consensus disorder prediction 242 298 - -
Lja1g3314 484 MobiDBLite consensus disorder prediction 90 112 - -
Lja1g3314 484 MobiDBLite consensus disorder prediction 158 212 - -
Lja1g3314 484 SMART WRKY_cls 187 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3314 484 SMART WRKY_cls 342 401 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3314 484 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 70 482 IPR044810 GO:0003700
Lja1g3314 484 Gene3D WRKY domain 329 395 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g3314 484 MobiDBLite consensus disorder prediction 80 116 - -
Lja1g3314 484 SUPERFAMILY WRKY DNA-binding domain 334 402 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g3314 484 ProSiteProfiles WRKY domain profile. 337 402 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3314 484 ProSiteProfiles WRKY domain profile. 182 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3314 484 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 70 482 - -
Lja1g3314 484 MobiDBLite consensus disorder prediction 237 325 - -
Lja1g3314 484 MobiDBLite consensus disorder prediction 1 49 - -
Lja1g3314 484 MobiDBLite consensus disorder prediction 165 181 - -
Lja1g3314 484 MobiDBLite consensus disorder prediction 301 325 - -
Lja1g3314 484 Gene3D WRKY domain 172 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g3314 484 SUPERFAMILY WRKY DNA-binding domain 183 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3314 Lja-Chr1 41203715 41207196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3314 5 459 WRKY Transcription Factor Family AT2G38470 43.977 1.63e-105 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g3314 WRKY 1.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3314 K13424 - gmx:100776837 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3314 1 41203715 41207196 Lja1g3314 1 41203715 41207196 ECH
Lja1g3314 1 41203715 41207196 Lja3g3392 3 66883677 66887417 PCT