Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3293 ATGGAGACCATGAAGCCATATGGAATGGCAGATCCTGCTTATCATGGGAGTGAGCAAGCACTCATTGCTTTAAAGAAAGGATCTCAGTTAATAAAGTATAGCCGGAAAGCAAAGCCAAAAGTTTGTCCATTCAGACTCTCCCTGGATGAAACAACACTGATTTGGATTTCTCGTAGAAAGGAAAGGACTCTGAAATTATCTTCAGTTTCACGTATTATCCCTGGACAAAGAACAGCTGTCTTCAGAAGATACTTACAACCAGAAAAGGATTACCTTTCATTTTCACTAGTTTACAATAGTGGGGAGCGGACCCTTGATCTGATATGCAAGGACAAAGCTGAGGTAGAGGTATGGTTTGCAGGCCTTAAGACATTAATTTCTTCTGGAAGGCATAATAGGCTTGCGGCTGGAGGTGAATTATCCGAGGATGATTTTATTCCGAACGCTCGTCCTTTTGGTGCAGCACTAGAGTTTGCTTCAAGCATTGCTCGTGGCAGGGTCTCTTTTGATATAGCTTCTAACGAGTCTTCATTGCAATCGGCAAGCCCAGATGTGGGGCTAGAGCGTGCAAATATGCTACCAAGGACAAGTATTGGAGATGGTTTTCGCGTTAGCGTGTCAAGCACACCTAGCTGTTCAAGTGGTGGATCAGGGCCTGATGACATTGAGTCACTAGGTGATGTTTATATATGGGGTGAGGTTTGGGAAAATGTGGTTTCACATGATGGATATGGAACTCAAGTCCCTTCCACAACAGATGTGTTGATTCCCAAGCCTCTTGAGTCGAGTGTTGTTCTCGATGTTCAACAGATTGCGTCCGGTGTGCGACACATGGCTCTAGTGACAAGGCAAGGAGAGGTTTTCACTTGGGGAGAGGAATCGGGGGGAAGACTTGGTCACGGCATTGATAAAGATTTCGGTCGCCCCCAACTTGTTGAGGTTCTATCAGTTACTAACATGGAGTTTGTTGCTTGTGGAGAGAATCATACTTGTGCTGTGTCTATATCAGATGATTTTTTCTCATGGGGTGATGGTGTATACAATGTTGGTCTTCTTGGCCAAGGCACTGAGGCTAGCCATTGGATACCAAAGAGGGTTAGTGGTCCTTTGGAAGGACTTCAAGTTATATCTATTGCTTGTGGCACATGGCATTCAGCATTAGCAACTTCTAATGGGAAACTTTTTACTTTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAAATAGAGAGAGTGTGCCATATCCAAAGGAGGTTCAATTGTTAAGCGGGTTGAAAACTTTGAAAGTCGCGTGTGGAGTTTGGCATACAGCGGCTATTGTAGAGGTTACATTTCAGTCTGGCTCAAATGTTTCATCAAGAAAGCTCTTCACTTGGGGAGATGGTGACAAATACCGTTTGGGACATGGGAACAAGGAAACATATCTTCAACCAACATGTGTCTCGGCGCTTATTGAATATAATTTCCACCAGATAGCGTGTGGACACACTATGACTATTGCTCTTACCACTTCTGGTCATGTGTTTACTATGGGAGGCAATGAGAATGGTCAACTAGGAAATCCTATGTCTAATGGAAAAGTACCTATGCTAGTGCAAGATAAATTGGTGGGTGAATTTGTTGAGGAAATTTCATGTGGATCTCATCATGTTTCTGCCTTGACATCAAGAAGTGAACTATACACTTGGGGAAAAGGTGAAAATGGAAGATTAGGACATGGAGATATAGAGGATAGAAAATCTCCTACATTAGTAGAAGCCTTGAAGGAGAGGCATGTGAAAAACATCTCCTGTGGGTCAAACTTCACATCTTGCATATGCATCCATAAATGGGTCTCTGGTGTTGACCAATCTGCTTGCACGGGATGTAGACAACCATTCGGTTTCACAAGGAAAAGGCATAACTGTTACAATTGCGGGTTAGTGCATTGTCATGCTTGTAGTTCAAAAAAGGTATTGAAAGCAGCATTGGCTCCAACTCCGGGAAAGCCTCATCGCGTGTGTGATTCTTGTTATACTAAGCTTAAAGCTGTTGAGGCAGCTGGCACTGCTTCTACTAATTTTAACAGAAAAGTTACCACCACGCCGCGTAGTTCCATAGACGGGAGGGAAAGATTTGGACAAGGAGAAGTAGGGCCATCCAGAATGCTCCTGTCTCCTTTCACGGAACCACTAAAATACCTTAACATGAGGACTAATAATAAGCTTGGAAACAAATATGACAACTCTTCCTTTGTCCCACCTGCTCAAGTTCCATCCATTTTACAATTGAAAGATATTGTGTTTCCAAGTTCTGCGAATTCCATTCAAAATGTTTTGAAGCCTGCAATATCTCCAAGTCCACCACAAACTCCACCTATAAACTCGAGACCAACATCGCCATACGCAAGAAGGCCTAGCCCGCCACGTTCTAGAACTCCTGGATTTTCTAAAAGTGTTATTGACAGTTTGAAGAAGACTAATGAGCTTTTGAACCAAGAAGTCTCACAATTGCAGAACCAAATGCGAAGTTTGAAGCAGAAAAGTGACATGGAAATTCAGAAGCTTCAGAAAAACGTAAAGGAAGCTACCTTGTTGGCTGCAGAGGAATCTTCTAAATGTAGAGCTGTGAAAGAAATTTGTGTGTCCACGGTAGATCAGATGAAAGAAATGGCAGAAAAGTTACCACCAGAAATTTCACCAAGTGAAAATTTTCAAACCACGCTTACCCGAGCTGAAGATTTTCTAAGAGAATTCGAATCATCTTCCGTGCCATCAAGCTTGACCTTTGAGCAACAAAGAGCATCTAGTACACTTGCTTCTACATTGCCAGAACATAGAATTGAAGGAAATAATGAAGCAGCAGCAGTTGACCAATCTCAAGATGGAGGAAATGTCCTTCAAGAAAGTAATAGATCTTCTGTTCCTAATACTGAAGCAGCAATGCCTCCTGAAAGCTCAGAAAGTTCAAGGTCACTACACCCTTCAAGATCAGTTAGGGAAGGAGAAACAGAAGTCACTGAGCAATTTGAACCTGGCGTTTATGTGACATTAGTAGTAAAGCCAGATGGCAATAAAGTTTTCAAGCGAGTTAGATTCAGTAAGCGAAGGTTCCATGCTCATCAGGCAGAAGAATGGTGGAACAGAAACAAAGATCAGGTGTTTAGGAAATATAGTACACAAGCTACAAATCCTGAAGGTTCTGGGTCATCATCTAGTGCAGCACCACCCCCTGCTGAAGAAAATACTGAGGCAGAAGAAGCACCTTCCTAA 3252 0.4268 METMKPYGMADPAYHGSEQALIALKKGSQLIKYSRKAKPKVCPFRLSLDETTLIWISRRKERTLKLSSVSRIIPGQRTAVFRRYLQPEKDYLSFSLVYNSGERTLDLICKDKAEVEVWFAGLKTLISSGRHNRLAAGGELSEDDFIPNARPFGAALEFASSIARGRVSFDIASNESSLQSASPDVGLERANMLPRTSIGDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGEVWENVVSHDGYGTQVPSTTDVLIPKPLESSVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHGIDKDFGRPQLVEVLSVTNMEFVACGENHTCAVSISDDFFSWGDGVYNVGLLGQGTEASHWIPKRVSGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVPYPKEVQLLSGLKTLKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTMTIALTTSGHVFTMGGNENGQLGNPMSNGKVPMLVQDKLVGEFVEEISCGSHHVSALTSRSELYTWGKGENGRLGHGDIEDRKSPTLVEALKERHVKNISCGSNFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHACSSKKVLKAALAPTPGKPHRVCDSCYTKLKAVEAAGTASTNFNRKVTTTPRSSIDGRERFGQGEVGPSRMLLSPFTEPLKYLNMRTNNKLGNKYDNSSFVPPAQVPSILQLKDIVFPSSANSIQNVLKPAISPSPPQTPPINSRPTSPYARRPSPPRSRTPGFSKSVIDSLKKTNELLNQEVSQLQNQMRSLKQKSDMEIQKLQKNVKEATLLAAEESSKCRAVKEICVSTVDQMKEMAEKLPPEISPSENFQTTLTRAEDFLREFESSSVPSSLTFEQQRASSTLASTLPEHRIEGNNEAAAVDQSQDGGNVLQESNRSSVPNTEAAMPPESSESSRSLHPSRSVREGETEVTEQFEPGVYVTLVVKPDGNKVFKRVRFSKRRFHAHQAEEWWNRNKDQVFRKYSTQATNPEGSGSSSSAAPPPAEENTEAEEAPS* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3293 1083 CDD PH_PLC_plant-like 18 127 - -
Lja1g3293 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 682 IPR013083 -
Lja1g3293 1083 Pfam Transcription factor regulating root and shoot growth via Pin3 996 1051 IPR013591 -
Lja1g3293 1083 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1060 - -
Lja1g3293 1083 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Lja1g3293 1083 PRINTS Chromosome condensation regulator RCC1 signature 553 574 IPR000408 -
Lja1g3293 1083 PRINTS Chromosome condensation regulator RCC1 signature 394 408 IPR000408 -
Lja1g3293 1083 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Lja1g3293 1083 PRINTS Chromosome condensation regulator RCC1 signature 287 303 IPR000408 -
Lja1g3293 1083 PRINTS Chromosome condensation regulator RCC1 signature 495 513 IPR000408 -
Lja1g3293 1083 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 16 1060 - -
Lja1g3293 1083 SUPERFAMILY PH domain-like 18 126 - -
Lja1g3293 1083 MobiDBLite consensus disorder prediction 947 986 - -
Lja1g3293 1083 MobiDBLite consensus disorder prediction 773 810 - -
Lja1g3293 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 454 505 IPR000408 -
Lja1g3293 1083 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 430 440 IPR000408 -
Lja1g3293 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 391 IPR000408 -
Lja1g3293 1083 MobiDBLite consensus disorder prediction 1050 1071 - -
Lja1g3293 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 226 284 IPR000408 -
Lja1g3293 1083 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 614 676 IPR017455 -
Lja1g3293 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 558 609 IPR000408 -
Lja1g3293 1083 MobiDBLite consensus disorder prediction 692 715 - -
Lja1g3293 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 336 IPR000408 -
Lja1g3293 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 443 IPR000408 -
Lja1g3293 1083 SUPERFAMILY FYVE/PHD zinc finger 610 678 IPR011011 -
Lja1g3293 1083 Coils Coil 814 866 - -
Lja1g3293 1083 Pfam FYVE zinc finger 610 676 IPR000306 GO:0046872
Lja1g3293 1083 Gene3D - 16 133 IPR011993 -
Lja1g3293 1083 SMART fyve_4 608 677 IPR000306 GO:0046872
Lja1g3293 1083 MobiDBLite consensus disorder prediction 1050 1083 - -
Lja1g3293 1083 SUPERFAMILY RCC1/BLIP-II 225 611 IPR009091 -
Lja1g3293 1083 Gene3D - 451 623 IPR009091 -
Lja1g3293 1083 Gene3D - 205 450 IPR009091 -
Lja1g3293 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 506 557 IPR000408 -
Lja1g3293 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 505 554 IPR000408 -
Lja1g3293 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 391 440 IPR000408 -
Lja1g3293 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 559 606 IPR000408 -
Lja1g3293 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 456 502 IPR000408 -
Lja1g3293 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 285 333 IPR000408 -
Lja1g3293 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 340 387 IPR000408 -
Lja1g3293 1083 MobiDBLite consensus disorder prediction 947 1000 - -
Lja1g3293 1083 Pfam Transcription factor BRX N-terminal domain 862 897 IPR027988 -
Lja1g3293 1083 ProSiteProfiles BRX domain profile. 997 1052 IPR013591 -
Lja1g3293 1083 CDD FYVE_like_SF 619 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3293 Lja-Chr1 40884239 40891768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3293 994 1057 Major Intrinsic Protein MIP AT1G31880 39.062 5.06e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3293 - - gmx:100779684 1560.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3293 1 40884239 40891768 Lja3g3401 3 67094048 67098747 PCT