Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3290 ATGGGTTCAAGGGAGCGAAGAAGAGTGGCTTTGCAACACACGTTGCAACAACTGCGAGATGCCACAAATTCCAGTGCTGTAAACAAAGCATCCATTATTGCGGACGCCTCCAAATACATAGAGGAGTTGAAGCAAAAAGTGGAGGATCTGAACTCAGAGCTTGGAGTTACTGAATCATCAACCACACAAATCGATGAACTACCTATGGTAAGTGTAAAAACCCTAGAAAAGGGTTTCCTCATTCAAGTGCTTTTAGAAAAGAGTTGTCCTGGCATGCTAGTCTCAATACTTGAAGCCTTCGAAGAACTCCAACTTGATGTGATTGATGCTAGGGCTTCTTGTGAAGACACTTTCCAACTAGAAACTGTGGCAAGAGAAAGTCACAAGAAGCACAGTGTTAACGCGCATGTGGTGAAGGAAGCAGTGTTGCAAGCAATCAGGAACACGGACTAA 453 0.4393 MGSRERRRVALQHTLQQLRDATNSSAVNKASIIADASKYIEELKQKVEDLNSELGVTESSTTQIDELPMVSVKTLEKGFLIQVLLEKSCPGMLVSILEAFEELQLDVIDARASCEDTFQLETVARESHKKHSVNAHVVKEAVLQAIRNTD* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3290 150 Gene3D - 4 67 IPR036638 GO:0046983
Lja1g3290 150 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 149 - -
Lja1g3290 150 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 149 - -
Lja1g3290 150 Coils Coil 33 60 - -
Lja1g3290 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 58 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3290 Lja-Chr1 40820768 40821867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3290 6 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46510 29.167 9.19e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3290 - - gmx:100527466 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3290 1 40820768 40821867 Lja1g3290 1 40820768 40821867 ECH
Lja3g3405 3 67133749 67135694 Lja1g3290 1 40820768 40821867 ECH
Lja6g1005 6 22577725 22579158 Lja1g3290 1 40820768 40821867 ECH
Lja1g3290 1 40820768 40821867 Lja6g1005 6 22577725 22579158 ECH