Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3278 ATGGAAAAGAAGGGAAGTGTGCTTATGCAAAGATATGAACTAGGGAGATTATTAGGCCAAGGAACCTTCGCAAAGGTCTACCATGCTAGGAACCTTATAACTGGCATGAGTGTGGCCATCAAGGTGATTGACAAAGAAAAGATTTTGAAAGTTGGAATGGTTGATCAGATTAAGCGTGAAATTTCAGTGATGAGATTGGTCAGCCATCCCAATGTGGTTGAGCTTTACGAGGTAATGGCTAGTAAAACCAAAATTTACTTCGTCATGGAGTATGTAAAAGGTGGTGAGCTCTTCAACAAAATAGCCAAAGGAAAGCTCAAGGTGGACGTTGCTAGGAGGTATTTTCAGCAACTGATTAGTGCAGTCGACTACTGCCACAGCAGGGGTGTGTGTCATCGAGATTTGAAGCCGGAAAATCTACTGTTGGATGAAAATGAAAATTTGAAGGTTATAGATTTTGGGTTGAGTACCCTTGCTGGATCTAGGTGTCAAGATGGATTGCTTCACACAACATGTGGTACCCCTGCATATGTTGCTCCAGAAGTGATAAACAGAGAGGGTTATGGTGGATACAAAGCTGATATATGGTCATGTGGGGTAATCTTGTATGTTCTATTGGCTGGTTACCTTCCATTCCATGATTCAAATCTGATGGAGATGTACAGGAAAATTGGTAAAGGAGAGTTTAAATATCCTAAATGGTTTGCCCCAGAAGTTCGTCGCTTATTGTCCAAAATACTGGATCCGAACCCAAAGACCAGGATATCGATGGCCAAGATTATGGAAAATTCTTGGTTTAAAAAGGGGTTAGAGAAGCTTGTTATTGTTGGGACACAAAACACAGAAAACCCTCCTCTAGATGCTGATAGTGTGTTTGAAGTGTCTGAGAATGGTGTAACTTTTGCAGAGTCAAAGCAAGAAGAGGCAAAGCTTTGTAATTTAAATGCTTTTGAGATCATCTCCTTCTCAACTGGTCTTGATTTATCAGGTTTGTTTGATGACACAGATCACATGAAAGAGACGCGATTCACGTCTAACAAGCCTGCCTCAGTTATAATCTCTAAGCTGGAAGAAGTTTGCAAGAGTCTTTGCTTGAAAGTAAAGAAGAAAGATGGAGGTTTCTTCAAGTTGGAAAGCTCCAAGGTAGGAAGGAAAGGGATTTTGGGTATTGAAGCTCAGATTTTTGAGATCACACCAGTTCTCCATCTAGTGGAATTGAAGAAGTCAAGTGGAGATACAGTTGAGTACCAGAAGCTTCTGAAACAAGACATTAGACCAGCACTTAAGGACATTGTTTGGACCTGGCAAGGAGAACAACCAAAGCAACCCCAACATGAAGTAGTGCAAGAAGAGGCTTTATCAGTACCACAGGAAACTGCATAA 1383 0.4107 MEKKGSVLMQRYELGRLLGQGTFAKVYHARNLITGMSVAIKVIDKEKILKVGMVDQIKREISVMRLVSHPNVVELYEVMASKTKIYFVMEYVKGGELFNKIAKGKLKVDVARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENENLKVIDFGLSTLAGSRCQDGLLHTTCGTPAYVAPEVINREGYGGYKADIWSCGVILYVLLAGYLPFHDSNLMEMYRKIGKGEFKYPKWFAPEVRRLLSKILDPNPKTRISMAKIMENSWFKKGLEKLVIVGTQNTENPPLDADSVFEVSENGVTFAESKQEEAKLCNLNAFEIISFSTGLDLSGLFDDTDHMKETRFTSNKPASVIISKLEEVCKSLCLKVKKKDGGFFKLESSKVGRKGILGIEAQIFEITPVLHLVELKKSSGDTVEYQKLLKQDIRPALKDIVWTWQGEQPKQPQHEVVQEEALSVPQETA* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3278 460 SUPERFAMILY Protein kinase-like (PK-like) 8 286 IPR011009 -
Lja1g3278 460 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3278 460 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Lja1g3278 460 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Lja1g3278 460 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3278 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lja1g3278 460 PANTHER - 2 445 - -
Lja1g3278 460 Pfam NAF domain 313 369 IPR004041 GO:0007165
Lja1g3278 460 Gene3D Transferase(Phosphotransferase) domain 1 92 297 - -
Lja1g3278 460 Gene3D Kinase associated domain 1, KA1 310 434 - -
Lja1g3278 460 CDD CIPK_C 315 429 - -
Lja1g3278 460 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Lja1g3278 460 MobiDBLite consensus disorder prediction 440 460 - -
Lja1g3278 460 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 445 - -
Lja1g3278 460 CDD STKc_SnRK3 11 265 - -
Lja1g3278 460 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3278 Lja-Chr1 40595047 40598731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3278 1 439 CBL-interacting serine-threonine protein kinases AT5G58380 66.225 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja1g3278 Pkinase 3.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3278 K07198 - gmx:100803787 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3278 1 40595047 40598731 Lja1g3278 1 40595047 40598731 ECH
Lja6g0991 6 22122450 22125025 Lja1g3278 1 40595047 40598731 ECH
Lja6g0317 6 7931590 7933826 Lja1g3278 1 40595047 40598731 ECH
Lja1g3278 1 40595047 40598731 Lja6g0991 6 22122450 22125025 ECH
Lja1g3278 1 40595047 40598731 Lja6g0317 6 7931590 7933826 ECH