Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3272 ATGAGAGACGCACAAAACGACACCGTTTCACCGGAGAAAACAGAAACGACAAACACCGATTTGCCAAACGACGTCGTTTTATTCGGCAAATACCATCTGCAAAACTTGCTCGGTGTCGGCGCGTCGGCGAAGGTGTACCACGCGCTGAACGTGGACACTGGCCAGAGCGTGGCGGTTAAGGTCGTCAGCAAGCGAAAGCTCGTCGCCGGCGGAGGTGGCTCTGCCGCCAGCATAGAGCGCGAGATCACCATCATGCGCCGTCTCAACCACCAAAACATCATCGAGCTCTTCGAGGTTCTCGCCACGAAAACCAAGATCTACTTCATCATGGAGTTCGCCGCCGGTGGAGAGCTTTTCCACGCCGTCGAGGGTAAAGGACGCCTCGACGAGCCTCTAGCAAGGAAATACTTCCGGCAATTGATCTCCGCCGTGAAGCACTGCCACTCCCGCGGCGTTTTTCACCGCGACCTGAAACTTGACAACCTTCTCCTCGACGGGAACGGCGACCTCAAGGTAACGGACTTCGGGCTGAGCGCGGTCAAGAGCCAGATCAGATCCGACGGGTTGCTTCACACCGCTTGCGGCACTCCGTCGTTCGTCGCGCCGGAGATTCTCGCGAAGAGAGGCTACGACGGCGCCACCGTTGATGTATGGTCATGCGGCGTCGTTTTGTTCGCACTCACGGCGGGTTATTTACCATTCAATGACTACAACATGACTGTTCTTTACCGCAAGATTTACCGCGGTCAATTTCGTTTCCCGAGGTGGACCTCACCTGATCTGAAGAATCTCTTATCACGCATGTTGGATCGGAGCCACGAGACGAGGATCACCATTGATGAGATCTTGGAAGATCCGTGGTTCATTGCGGGTGGGTACATACCCGACCCGGTTTTGGTCAAGGAGAAACAGTGTGAGGATGCACAAACCGGGGTGGATTGCTTGAACGCGTTTGATTTGATATCTTTCTCCACCGGGTTGGACATGTCGGGTATGTTTGTAGATCCAATCGGGTCGGATTCTGTGGAGCGGGTTGTATCGGAGGCGGCGGCGGAGGGGGTTGTTGAGAGAGTGGTGGCGGCTGCGAGAGAGGCGGGGTTGGTGGTGAAAAGGAAGGAGAATGAAGTCAAATTGGAAGGGCATGATGATAATTTGATTGCACTAGTAGTGGTTTACCGGTTAACGGATGAGTTGGTGGTTGTTGAAATGAAGAGGCGTGAGAAGGGATGTGAATGTGGTTGTAAATTCTGGAAAGATAAATTGCGGCCTTTGCTTTTTGAATTGGCTCGCAAACAGGAAGTCCCGGTCACTCGGTGA 1317 0.5376 MRDAQNDTVSPEKTETTNTDLPNDVVLFGKYHLQNLLGVGASAKVYHALNVDTGQSVAVKVVSKRKLVAGGGGSAASIEREITIMRRLNHQNIIELFEVLATKTKIYFIMEFAAGGELFHAVEGKGRLDEPLARKYFRQLISAVKHCHSRGVFHRDLKLDNLLLDGNGDLKVTDFGLSAVKSQIRSDGLLHTACGTPSFVAPEILAKRGYDGATVDVWSCGVVLFALTAGYLPFNDYNMTVLYRKIYRGQFRFPRWTSPDLKNLLSRMLDRSHETRITIDEILEDPWFIAGGYIPDPVLVKEKQCEDAQTGVDCLNAFDLISFSTGLDMSGMFVDPIGSDSVERVVSEAAAEGVVERVVAAAREAGLVVKRKENEVKLEGHDDNLIALVVVYRLTDELVVVEMKRREKGCECGCKFWKDKLRPLLFELARKQEVPVTR* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3272 438 Gene3D Transferase(Phosphotransferase) domain 1 23 314 - -
Lja1g3272 438 CDD CIPK_C 316 425 - -
Lja1g3272 438 Pfam NAF domain 314 370 IPR004041 GO:0007165
Lja1g3272 438 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Lja1g3272 438 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 14 436 - -
Lja1g3272 438 Gene3D Kinase associated domain 1, KA1 315 429 - -
Lja1g3272 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Lja1g3272 438 ProSiteProfiles Protein kinase domain profile. 31 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3272 438 Pfam Protein kinase domain 31 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3272 438 SUPERFAMILY Protein kinase-like (PK-like) 27 295 IPR011009 -
Lja1g3272 438 SMART serkin_6 31 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3272 438 PANTHER - 14 436 - -
Lja1g3272 438 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3272 Lja-Chr1 40488769 40490746 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3272 23 422 CBL-interacting serine-threonine protein kinases AT2G30360 55.283 4.79e-157 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja1g3272 Pkinase 1.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3272 - K12761 gmx:100788245 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3272 1 40488769 40490746 Lja1g3272 1 40488769 40490746 ECH