Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3271 ATGGGCAATTGCAGGTTCAGATTATCAGATATGATGCCCAATGCTTGGTTTTACAAGCTCAGGGACATGGGAAGAGCAACAAAGCAAACCCCAACAACACAACCCAGGAAGAAAAAGCAACCTTCACCAGTCTCATTCCCACACTCATCAAAACCAAAGCAACAACCTCACCAGTGCACTCCCAGAAAGTCTTACTACTTCACAAGAGAACTCAACTCACCCAACAACAGAATCCACACTTCACCAGCAAAAAATAACCAAAATGTTCAAGATTCCAATTACCCTGAATCACCCAGAAAATCATCCAAACAAAGGACCAAGAGAAGAACCACTTCTTCACCTAAGCTTGTAACCCCTTCATCTGCTAATTGCAGCTGCCACAACAACCTTGAATCACATTCCCCACTTGAAAGCTCAGCAGAATCAGGATCCCCTGAACCAGAAAACAGAACAGACAACGTTCTTCTTCCCACTCAGACGGTTTCAGGGTCCAACACTTGTGGCTGCAAGCTGCACTGCAACAACAACACCAATGACATCATCATCGATGTGGACAACAATTCCATAGTCAGAAAAGATGATAAGCTAGATGCGTATGAGTATGACTCAATTTCACAGCAACCAGTGCTTCCACCAATCTTGACCAAACCAGCAAAGTTCAAAGACATTGTGGTGGATGCAAAGAAGAAAGAAACCAAACCCAGAAGCAGAATCAGAATCACTGCTGCAAATGAAGAACACAATGTAAAAGGGTCACTGAAAGTAAAGATTTTGAAGGAACAACAACAGATGAAAACCCCAAGTAGGAGATTCTCCTTAACTTCTTCTCCTGGTGTGAGAATTCGGATGAACTCGCCAAGAATCGGAAGCCGGAGAGTTCAGGGACATGGCCGGAAAAGTGTTTCCTCCAGCCGCGGCCGCGGCGGCCGGAGCAGTTTCTCGAATAGTTTCGCGATTGTGAAGTCGTCGTTTGATCCGCAGAGGGATTTCAGAGAATCAATGGTGGAGATGATTGAGCAGAACAACATCAGGGATTCAAAGGATTTGGAGGATCTTCTAGCTTGTTACCTTTCTCTGAACTCAGATGAGTATCATGATCTCATTATCAAAGTGTTCAAGCAAATTTGGTTTGATTTAACTGATAATTAG 1149 0.4386 MGNCRFRLSDMMPNAWFYKLRDMGRATKQTPTTQPRKKKQPSPVSFPHSSKPKQQPHQCTPRKSYYFTRELNSPNNRIHTSPAKNNQNVQDSNYPESPRKSSKQRTKRRTTSSPKLVTPSSANCSCHNNLESHSPLESSAESGSPEPENRTDNVLLPTQTVSGSNTCGCKLHCNNNTNDIIIDVDNNSIVRKDDKLDAYEYDSISQQPVLPPILTKPAKFKDIVVDAKKKETKPRSRIRITAANEEHNVKGSLKVKILKEQQQMKTPSRRFSLTSSPGVRIRMNSPRIGSRRVQGHGRKSVSSSRGRGGRSSFSNSFAIVKSSFDPQRDFRESMVEMIEQNNIRDSKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTDN* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3271 382 ProSiteProfiles OVATE domain profile. 319 378 IPR006458 -
Lja1g3271 382 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 5 382 IPR038933 GO:0045892
Lja1g3271 382 Pfam Transcriptional repressor, ovate 323 379 IPR006458 -
Lja1g3271 382 MobiDBLite consensus disorder prediction 72 153 - -
Lja1g3271 382 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 5 382 - -
Lja1g3271 382 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 318 380 IPR006458 -
Lja1g3271 382 MobiDBLite consensus disorder prediction 72 99 - -
Lja1g3271 382 MobiDBLite consensus disorder prediction 286 313 - -
Lja1g3271 382 MobiDBLite consensus disorder prediction 296 313 - -
Lja1g3271 382 MobiDBLite consensus disorder prediction 111 153 - -
Lja1g3271 382 Pfam DNA-binding domain 1 43 IPR025830 GO:0003677
Lja1g3271 382 MobiDBLite consensus disorder prediction 27 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3271 Lja-Chr1 40456101 40457491 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja1g3271 Ovate 4.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3271 - - aprc:113863721 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3271 1 40456101 40457491 Lja1g3271 1 40456101 40457491 ECH