Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3269 ATGGAATTGTCTGATACAAGCAATTTAGCCATGTACAAGGGGAGATTCTGCACTAATGGTGGAATAAAGGCTCAGCTTGGTTATGTTGAAACCGATCCTTCCAATCGATACGGACGCTTCAGGGATGTTCTGGGAAAAGGAGCTATGAAAACTGTGTACAGGGCATTTGATGAACACCTAGGAATTGAAGTGGCTTGGAACCAAGTCAAACTCGGTGATGTATTTCATTCACCAGAGCAACTTCAGCGTCTTTATTCAGAGGTTCATCTTCTCAAGCACCTTGACCATCAATCCATGATGATCTTCTACGGTTCTTGGATCGATGTCAATGGTAGAACCTTCAATTTCATCACCGAATTGTTCACCTCCGGCACCCTCAGAGAATATAGGCAGAAGTATAAGCAAGTGGATATGAGAGCATTGAAGAATTGGGCTCACCAGATTCTATGTGGATTGGAGTATTTACATAGCTGTGATCCTCCTGTGATCCATAGAGACCTCAAGTGTGATAACATCTTTGTCAATGGCCATATGGGGCAGATCAAGATTGGTGACTTAGGCCTTGCAGCTATACTTTGTAGCTCCCAAGTTGCCCACAGCGTCATAGGTACACCAGAGTTCATGGCACCAGAGCTTTATGAAGAGAGATACAATGAGCTTGTAGACATATACTCCTTTGGCATGTGTATGATAGAGATGCTTACTCTTGAGTTCCCATACAGTGAGTGCTCCAACCCAGCTCAAATATACAAGAAAGTTACTTCGGGGAAGCTACCAGATGCACTTTACAGAATCCAAGATTTGGAAGCCAGAAGGTTCGTGGGAAGATGTTTGACAAATGTATCAAGGAGACCTTCAGCAAAGAAGCTCTTGTTGGACCCATTTTTAGCCACGGAACAACTTGAATCGCTGCCAAGCACACCAATATCTACATATCAAACTCACAAGCTTAATTCCACTTTAGCAGTTGCCAATGAGCACACTGCAAAAGTTGATAAGACAAAGAGAAACACAGACATGACAATCACAGGGACAATAAATGAAGAGAACAACACCATTTTCCTTAAAGTGCAGATACCTGATGAAATGGGGAAAGCAAAACATATATTCTTTCCATTTGACACAAGAAAAGATACTGCTGCTGAGGTAGCCATGGAGATGGTGCAAGAACTTGAAATTAGCCACTTTGGACCATTAGAGATTGCTGCAATGATAGATCATGAGATATCAGCTTTAGCTCCAACTTGGAAGGATAGGGGCAAGTGTAAGCACCAGCCACAGCACAGCTTTAACTATGAAGAAGATGAGGATATCAATAACCATCATCCTTTCTTCTTATCATCTTCTTCTTCATCTTCCCATCATGGTTCTCTCCCGAAGTCTAGCTCCTCCTCCAAGACCCATATCCGTGGGAACCATCACAAATTTACTCAAGATGATGACATGTTCATGAATGGCGATGCAAGCTCTCAAAGCTCGATGAACTCCTACAAGTGTTCCAATTTTCAATATTGCCACTCGGTAAATAAACACCCAATAGTAGATGGAAATAAACACAACAACAAGACGTCCACAAGACCACATCGTGCGGAATTGGATGAAGCTAATATCAGCAAATTACAACTTGGCTACTCGACAAAGGACTCTTGCAATTTCAGATGTGGTGCTTCAAGCCATGGGTGTTCTGGACAAACAAAAGTTCGTTCTTACGTGGATGATCGGAGGAGCCAGCAGGTTCAACGCTCAATGATATTGGAGATGTACAAGAATCGTAATTCCAACACAATAGGGGGTGTTGAAGGCATTGGGTTTCAACCACCAAAGAGAGGTGGACGAATTCGTCGTCTAAGTCTTGATGAGTAG 1863 0.4267 MELSDTSNLAMYKGRFCTNGGIKAQLGYVETDPSNRYGRFRDVLGKGAMKTVYRAFDEHLGIEVAWNQVKLGDVFHSPEQLQRLYSEVHLLKHLDHQSMMIFYGSWIDVNGRTFNFITELFTSGTLREYRQKYKQVDMRALKNWAHQILCGLEYLHSCDPPVIHRDLKCDNIFVNGHMGQIKIGDLGLAAILCSSQVAHSVIGTPEFMAPELYEERYNELVDIYSFGMCMIEMLTLEFPYSECSNPAQIYKKVTSGKLPDALYRIQDLEARRFVGRCLTNVSRRPSAKKLLLDPFLATEQLESLPSTPISTYQTHKLNSTLAVANEHTAKVDKTKRNTDMTITGTINEENNTIFLKVQIPDEMGKAKHIFFPFDTRKDTAAEVAMEMVQELEISHFGPLEIAAMIDHEISALAPTWKDRGKCKHQPQHSFNYEEDEDINNHHPFFLSSSSSSSHHGSLPKSSSSSKTHIRGNHHKFTQDDDMFMNGDASSQSSMNSYKCSNFQYCHSVNKHPIVDGNKHNNKTSTRPHRAELDEANISKLQLGYSTKDSCNFRCGASSHGCSGQTKVRSYVDDRRSQQVQRSMILEMYKNRNSNTIGGVEGIGFQPPKRGGRIRRLSLDE* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3269 620 MobiDBLite consensus disorder prediction 442 466 - -
Lja1g3269 620 SMART serkin_6 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3269 620 Gene3D Transferase(Phosphotransferase) domain 1 121 302 - -
Lja1g3269 620 PANTHER WNK KINASE 4 608 - -
Lja1g3269 620 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Lja1g3269 620 ProSiteProfiles Protein kinase domain profile. 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3269 620 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 608 - -
Lja1g3269 620 Pfam Protein kinase domain 42 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3269 620 CDD STKc_WNK 36 296 - -
Lja1g3269 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Lja1g3269 620 MobiDBLite consensus disorder prediction 441 490 - -
Lja1g3269 620 SUPERFAMILY Protein kinase-like (PK-like) 40 331 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3269 Lja-Chr1 40407790 40412841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3269 26 437 MAP Kinase Kinase Kinase AT3G51630 65.796 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lja1g3269 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3269 K08867 - gmx:100272206 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3269 1 40407790 40412841 Lja1g3269 1 40407790 40412841 ECH
Lja1g3269 1 40407790 40412841 Lja3g3810 3 75091665 75098712 PCT