Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3265 ATGAGTTTCAGAGAAAGGAACATAGGAGGAGGAGATAGGGAATGTGAAGAATCCAAATCAGTGAGGCAAAATGGGTCTTTAACAACCACACAGCTAACAATTGATGAGAATCTTTTGGTTGATCCCAAACTGCTCTTTATTGGGTCCAAGATTGGTGAGGGAGCTCATGGAAAAGTATATGAAGGAAGGTGTAGGTTTTCCAGGTATGGAGATAGAATTGTTGCGATCAAAGTTCTGAATCGTGGAAGGACCTCAGAAGAAAGAGCTTCCCTTGAAGATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGACAATCTTGTTAAGTTTATTGGAGCGTGTAAGGATCCTCTTATGGTGATAGTTACAGAGCTATTACCAGGGATGTCACTGCGGAAATATTTAATGAGCATCCGTCCTAACCTATTAGACCGTCACGTGGCTATAAACTTTGCCCTTGATATTGCTCGAGCCATGGATTGGCTGCATGCCAATGGGATCATACATAGAGATTTGAAGCCTGACAATCTCTTGCTCACAGCGAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCTGTGACTGAGATGATGACTGCAGAAACTGGAACTTACCGATGGATGGCACCAGAACTGTACAGTACTGTAACATTACGCCAAGGAGAGAAAAAACATTATAACAATAAGGTTGATGTGTATAGCTTTGGAATTGTTTTATGGGAGCTACTAACAAACCGCATGCCGTTTGAGGGGATGTCCAATTTACAGGCTGCGTATGCAGCTGCGTTTAAGCATGAGAGGCCCGGCATTCCAGATGATATATCCCCTGATCTTGCTTTCGTCGTACAATCATGCTGGGTTGAAGATCCTAACTTGAGACCAAGCTTTAGTCAGATCATTCGCATGCTCAACGCGTTTCTGTTCACACTCACACCACCATCCCCTCATTTGCCGGAACCTGAAAATGAACCTGAAGTGGCAACGACAAGTAACGGTACCATTACAAGTAACGGTACCATTACTGAGTTTTCTGCCCGAAACAGAGGAAAGTTTGCTTTTCTCCGCCATTTGTTTTCTTCAAAGAGGGCCAAAAACTAA 1122 0.4314 MSFRERNIGGGDRECEESKSVRQNGSLTTTQLTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRCRFSRYGDRIVAIKVLNRGRTSEERASLEDRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPNLLDRHVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKHERPGIPDDISPDLAFVVQSCWVEDPNLRPSFSQIIRMLNAFLFTLTPPSPHLPEPENEPEVATTSNGTITSNGTITEFSARNRGKFAFLRHLFSSKRAKN* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3265 373 Gene3D Phosphorylase Kinase; domain 1 33 129 - -
Lja1g3265 373 Gene3D Transferase(Phosphotransferase) domain 1 133 331 - -
Lja1g3265 373 PANTHER SERINE-THREONINE PROTEIN KINASE 10 341 - -
Lja1g3265 373 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g3265 373 CDD STKc_MAP3K-like 51 311 - -
Lja1g3265 373 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g3265 373 ProSitePatterns Protein kinases ATP-binding region signature. 51 77 IPR017441 GO:0005524
Lja1g3265 373 SUPERFAMILY Protein kinase-like (PK-like) 43 336 IPR011009 -
Lja1g3265 373 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 10 341 - -
Lja1g3265 373 MobiDBLite consensus disorder prediction 322 345 - -
Lja1g3265 373 ProSiteProfiles Protein kinase domain profile. 45 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3265 373 SMART serkin_6 45 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3265 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Lja1g3265 373 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Lja1g3265 373 PRINTS Tyrosine kinase catalytic domain signature 126 139 IPR001245 GO:0004672|GO:0006468
Lja1g3265 373 PRINTS Tyrosine kinase catalytic domain signature 164 182 IPR001245 GO:0004672|GO:0006468
Lja1g3265 373 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Lja1g3265 373 Pfam Protein tyrosine and serine/threonine kinase 47 311 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3265 Lja-Chr1 40333790 40338514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3265 33 373 MAP Kinase Kinase Kinase AT5G01850 72.603 9.79e-180 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja1g3265 PK_Tyr_Ser-Thr 2.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3265 - - jre:109021493 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3265 1 40333790 40338514 Lja1g3265 1 40333790 40338514 ECH