Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3260 ATGCAGCGGCGTTTTCTCGAAAAGGAGCTGAGCATGCCACCGTCGCCGTCGCACGGGAACAAGACCCAGAATTCGATCTTCAACAACGCGAATTTCGACACCAAAATGGTGGTGGTCCTGGCAGTGATACTGTGCGCATTGATTTGCGTGTTTGGGCTGAACACAATCGCGAGTTGCTTGACGCGATTGACGCGGAGATTCTCCCGCAGGGATACGACGACGGCGGCGGCGAGGGGGCTGAAGAAGCGTGACCTGAAGCAGATCCCGGTGGCGGTGTACGGATCCGGCAGCAGCGGCGAGGAGATTCCGGCGACAGAGTGCCCCATTTGCCTAGGGGAGTTCGAGAAGGGTGATAAGCTCCGAATGTTGCCGAACTGCAATCACGGGTTTCACGTGAGGTGTATAGACACGTGGTTGGTGTCGCATTCTTCGTGCCCCAATTGCCGCCACTCGCTACTGCTCGGGAAGCGACAGCAACAGCAACACGGATCGACCGCTTCTGCTTCTGCCGTCGCCGCCGTGGAAGGGTCGCCGGGAAATGGGTCCGGCGAGAGGAGTGATGTTGTGGTGACCGTCGCGCAGGCAAGTTGA 591 0.5888 MQRRFLEKELSMPPSPSHGNKTQNSIFNNANFDTKMVVVLAVILCALICVFGLNTIASCLTRLTRRFSRRDTTTAAARGLKKRDLKQIPVAVYGSGSSGEEIPATECPICLGEFEKGDKLRMLPNCNHGFHVRCIDTWLVSHSSCPNCRHSLLLGKRQQQQHGSTASASAVAAVEGSPGNGSGERSDVVVTVAQAS* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3260 196 Pfam Ring finger domain 106 149 IPR001841 -
Lja1g3260 196 SMART ring_2 107 148 IPR001841 -
Lja1g3260 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 153 IPR013083 -
Lja1g3260 196 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 193 - -
Lja1g3260 196 PANTHER RING-H2 FINGER PROTEIN ATL74 1 193 - -
Lja1g3260 196 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Lja1g3260 196 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g3260 196 CDD RING-H2_EL5_like 106 149 - -
Lja1g3260 196 SUPERFAMILY RING/U-box 97 155 - -
Lja1g3260 196 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3260 Lja-Chr1 40245552 40246216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3260 1 154 C3H Transcription Factor Family AT3G10910 51.807 5.83e-55 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3260 - K19040 lja:Lj1g3v2492550.1 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3260 1 40245552 40246216 Lja1g3260 1 40245552 40246216 ECH