Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3259 ATGTTCCAGTCTTCCTCTCCGTCGGACCGGCTGGGCAAGAGAATTGCAGCTTCCACTGAACTAAACTGTAGATACGATGTGTTTATTAGTTTCAGAGGTTCTGACACCCGCAACACCTTCGTGGATAATCTTTATGGACAGCTCATTAGAAAAGGTATTGTTGTCTTCAAGGATGACAAACTGCTCGAAAAAGGAAAATCCATTTCACCACAGCTTCTCCAAGGGATTCAAGATTCGCGAGTTTCTATTGTTGTCTTCTCCAAAGATTATCCTTCATCAACATGGTGTTTGGATGAACTGGCTGCCATCGCTGAATGCCATGAGAAGTCCAAACAAACTGCTTTCCCTGTTTTCTATGATGTTGATCCATCTGAGGTGCGAAAACAGAAAGGAGCTTATGAGAATGCTTTTGCTTTACACGCTGAGGCTGAGCAATCCCAACAAGGATCAACCAGAGTTGATAGATGGAAGGGAGCTATGACCAGTTTGGCCGGATTAGCTGGTTGGGATGTCAGAAATAAACCAGAGTATGAAGAGATTGGAAAAATTGTTGAAGGAGTAATAAAAGTGTTGGGTCATAAATTCTCTCTTGGTGCTAATGACCTCATTGGGATACAACCACGTGTACAAGAATTAGAAAGCCTTTTAAAATTAGGCTCAATAAATGACGAGTTTCGAGTTTTAGGAATTTGGGGGATGGGTGGAATAGGGAAGACAACCCTTGCGTGCGGGTTGTATGACAGAGTCTCATATTTGTTTGAAGCTTGTTGTTTTATTGAGGACGTAAGCAATGTTTACAAAGATGGAGCAATTGCCATACAGAAACAAATTCTTCGTCAAACTTTGGACGAAACAAATCTAGAGACATATGGTCCTTCTGAAATATCTGGAATTGTGAGAAAAAGGCTACACAATGTAAAGCTCCTTATAGTTCTTGACAATGTGGATCAATTTGAACAACTAGAGAAATTGTGTATAGATCCCAAGTTGCTTTGTGCAGGAAGTAGAATGATCATAACCACAAGAGATGAGCATATTCTTAGAACTTATGGAGCTGATAAGGTTTATGAAGTTCAACAATTGGATGCCGATGATGCTTGTAAACTTCTGTGTAGAAAGGCCTTCCAAAGAGATGGTCCATGGAACATTTTTGAAAAGTTGATTCCTGAGGTACTAAACTATGCTCAAGGTCTTCCATTAGCAATTAGAGTAATGGGTTCTTTTTTGTATACTCGAGATCCTTCACAGTGGAGAGCTACCTTGGATGGATTGCATAATAATCCAGACAGAGGAATTGTGGAAGTGCTTCAGAAAAGTTATGACGGACTGCAGCCAAGAGTGCAAGAAATATTTTTGCATGTTGCATGTTTCTTTAAACGGGAGAGGGAGGATTATGTGAAGCGAATTCTTGATGCTTGTGGATTATACCCTGATATTGGAATTCCACTTCTTATTGAAAAGTCGTTTATATCCATTAGAAACCAGGAAATTCATATGCATGACATGTTGCAAGAATTGGGTAAGCAAATTGCTCGGGGAAAACATCTTGATGAGCCAGAATGCTGGAGTAGATTATGGCTTTACAGTGATTTCCATCGAGTGATGATGTCAGAAACGGGAGCAACAGGAGTTAAAGCCATAGTTTTAGATCAAAAGGAAGATGCCTTCAAATTCAATAAGTTGAGAGCTGAAGATTTATCAAAAATGACGTGCCTAAAACTGCTCATAATATCTCATAAGAATTTTTCAGGAAGGCCTGTATCCCTTTCTAACTTGCTACGTTATTTTTCATGGAATGGTTACCCTTTCACTTCTTTGCCACCAACTTTTCATCCCTGTGACCTTGTCGAATTAAACATGCCCGATAGTAGCCTCGAACAACTATGGGAAGGCATCGTGTTTCTACCCCATTTGAAAAGGATGGATCTAAGCAACTCCAAAAATCTCAAGATGACTCCAAATTTTGAAGAAACCGAAAAACTTGAGCGGCTAGATTTGACTGGATGCATAAATTTGTTGCAGGTCCATCCATCAATTGGACTTCTTGACAAACTTGTGTTCTTGAGTCTTCTAAACTGTTGCAGTCTGGTTAGCTTCGAATTCGGCAGTAATGGATCAAAATTAGGTTCTCTGAGAGTTCTACATCTCTCTGGTTGCATAAAACTTGAAAAGAGTCCAAATCTCACAGGAGCAGAGAGTCTTGAGTACCTTGATATGGATCGCTGTACAAGGCTATCTACGGTTCATGAATCTATTGGATATCGTAAAAAGCTGAGATTCTTAAGTTTGCGAGACTGCACTAATCTTGTTGGATTACCTGACAGCATTGATTTTATGTCATCTCTTATGACTCTAGATTTATGCGGCTGCTCGGAATTTATGAATCTGCCCTTGCAATCAACTATCAATTCTTCAGCTATGGAATCTTTGGTTTCTCTGGACTTAAGCTTTTGCAGTATTCTTGAAGTACCTAATGCTATTGGAAGATTATGGTGTTTAGAAAGACTAAATCTACAAGGAAACAACTTTGTTGAACTGCCTTCTACAATTAGTAGGCTTCGTAGGCTAGCATATTTGAACCTGTCTCATTGCATAAAGCTTGGAGATTTGCCTCTGCTCCCATCAGAATGTGCTCCATTAGGGGGAAGATATTATGAAACAACATCTGAATCTCGTGATCATAGGTCCGGATTATATATTTTCAACTGTCCCATTGTGGGGAAAAAGTTAAATAATGAGTTGCTACATGGCACTCCATCAAACCAAGAAGAACCATCAGTTTGGTGGCTGACTCTATTACGATGGATATCGAGACTATATACAGAACCTCGTAACTTCCGATGTGGGTTTGACATTGTTTCTCCTTGGCATTGGGAAGATGGTGATTATCAAAGAAAGAGTATTATTCCACGATGTTTTGATCATCGCGTTGAGGGGGGTTCAATAATAAGGACAAAGCTCTCTGATATTGATGTTGGCTGGGACGGCTGTCTCTTTTGTGTAGCATTTCAGGTGAATAATCACTCTACAATTTTTGCTTCTTCACATCGGTCGAATTCCTCACGACTACCACATCCTTTTTATCTTTCCTTTGAAAGTGAACACACGGAAGAGCGCTTTGATATGCCTCTTGATTTAGATCTGGATAAAAGTGATGGTTCAAAATATCTTTGGATAATCTATATCTCTCGGCAGCACTGCCATTTTGTGGCAACGGGAGCTCAAATCACATTTAAAGTGCGCCATGGTTTGATTGTGGAGGAATGGGGATTACGCATGCTGACTAAGGAACACATGGAGGCTTCAGGAATGATACAAAGTACAGATCTTTCTTCACTTATCATTGATTATGTGGAAGAAAGCAACAGAAGCTTTGTGCCCAAAATCCAACTTCCTTACAATTGGCTAATTTCTGGTGAAGAGGAAGTCAAGATTCATAACACCAAGGGAAAAGAAATTGAACTCTCTAATCTTGGCCTTTGA 3483 0.3982 MFQSSSPSDRLGKRIAASTELNCRYDVFISFRGSDTRNTFVDNLYGQLIRKGIVVFKDDKLLEKGKSISPQLLQGIQDSRVSIVVFSKDYPSSTWCLDELAAIAECHEKSKQTAFPVFYDVDPSEVRKQKGAYENAFALHAEAEQSQQGSTRVDRWKGAMTSLAGLAGWDVRNKPEYEEIGKIVEGVIKVLGHKFSLGANDLIGIQPRVQELESLLKLGSINDEFRVLGIWGMGGIGKTTLACGLYDRVSYLFEACCFIEDVSNVYKDGAIAIQKQILRQTLDETNLETYGPSEISGIVRKRLHNVKLLIVLDNVDQFEQLEKLCIDPKLLCAGSRMIITTRDEHILRTYGADKVYEVQQLDADDACKLLCRKAFQRDGPWNIFEKLIPEVLNYAQGLPLAIRVMGSFLYTRDPSQWRATLDGLHNNPDRGIVEVLQKSYDGLQPRVQEIFLHVACFFKREREDYVKRILDACGLYPDIGIPLLIEKSFISIRNQEIHMHDMLQELGKQIARGKHLDEPECWSRLWLYSDFHRVMMSETGATGVKAIVLDQKEDAFKFNKLRAEDLSKMTCLKLLIISHKNFSGRPVSLSNLLRYFSWNGYPFTSLPPTFHPCDLVELNMPDSSLEQLWEGIVFLPHLKRMDLSNSKNLKMTPNFEETEKLERLDLTGCINLLQVHPSIGLLDKLVFLSLLNCCSLVSFEFGSNGSKLGSLRVLHLSGCIKLEKSPNLTGAESLEYLDMDRCTRLSTVHESIGYRKKLRFLSLRDCTNLVGLPDSIDFMSSLMTLDLCGCSEFMNLPLQSTINSSAMESLVSLDLSFCSILEVPNAIGRLWCLERLNLQGNNFVELPSTISRLRRLAYLNLSHCIKLGDLPLLPSECAPLGGRYYETTSESRDHRSGLYIFNCPIVGKKLNNELLHGTPSNQEEPSVWWLTLLRWISRLYTEPRNFRCGFDIVSPWHWEDGDYQRKSIIPRCFDHRVEGGSIIRTKLSDIDVGWDGCLFCVAFQVNNHSTIFASSHRSNSSRLPHPFYLSFESEHTEERFDMPLDLDLDKSDGSKYLWIIYISRQHCHFVATGAQITFKVRHGLIVEEWGLRMLTKEHMEASGMIQSTDLSSLIIDYVEESNRSFVPKIQLPYNWLISGEEEVKIHNTKGKEIELSNLGL* 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3259 1160 Gene3D - 22 194 IPR035897 -
Lja1g3259 1160 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 756 868 - -
Lja1g3259 1160 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 723 - -
Lja1g3259 1160 SUPERFAMILY L domain-like 499 872 - -
Lja1g3259 1160 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 756 868 IPR044974 GO:0006952
Lja1g3259 1160 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 723 IPR044974 GO:0006952
Lja1g3259 1160 Pfam NB-ARC domain 222 442 IPR002182 GO:0043531
Lja1g3259 1160 Pfam TIR domain 25 176 IPR000157 GO:0007165
Lja1g3259 1160 Pfam Leucine Rich Repeat 614 632 IPR011713 -
Lja1g3259 1160 Gene3D Ribonuclease Inhibitor 545 886 IPR032675 -
Lja1g3259 1160 SMART till_3 24 166 IPR000157 GO:0007165
Lja1g3259 1160 Gene3D - 360 444 IPR042197 -
Lja1g3259 1160 Gene3D - 195 358 IPR027417 -
Lja1g3259 1160 PRINTS Disease resistance protein signature 395 409 - -
Lja1g3259 1160 PRINTS Disease resistance protein signature 227 242 - -
Lja1g3259 1160 PRINTS Disease resistance protein signature 302 316 - -
Lja1g3259 1160 PRINTS Disease resistance protein signature 805 821 - -
Lja1g3259 1160 ProSiteProfiles TIR domain profile. 23 191 IPR000157 GO:0007165
Lja1g3259 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 453 IPR027417 -
Lja1g3259 1160 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 169 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3259 Lja-Chr1 40188379 40201634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3259 701 871 WRKY Transcription Factor Family AT4G12020 36.628 1.22e-17 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3259 - - lja:Lj1g3v2482340.1 2026.14