Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3258 ATGGGGTGTTTCACTGTATTGAAGAGCAAGAAGAAAAAGTCTGATCAGATTGCGTATGTAAAACGTGCAAGCCAAAAAGAGCATGTACCTACAGTACTGCCTGAACCTCAAACTCATACTCGCTCACTTCAGTCTGCACCTCCTAGTTTTAGGACCAGAGTGAAACCCATTCAATCCATTAATAAAGTCACTAACAATAGAACACGAGCATTATCTGCTCCATCAACGCTTGATGCAGCAGAACAAGATGCTTTGGCTGCTGTTGAGTATGAAGAACAAGAAGAGCCAAAATACAGAACTGGATCAATGAAGGAGCAGCATTCATCTAGTCCACAGCCTTTACCGCTTCCATCTCCTCAGGGCAGTGGTGCACTGAAGGCTTATGCCAGTTTCAAGTTGGGGACAGCTAGTGGTCCTCTAAATGCTTCTGGTCCTTTGCCACTTCCACCTACTGGGTCACTTCGGAATTTTCCGTATGACGAAATTGCTGCTGCTTGCCACCATTTCACTTCTGATCGATACATGTCAGAATCTCTTTCGTCCACCATATATAAAGCTTCCTTTGGTGATGATCCTTCAAGTTCAAAGAAGTTTGAAGCTACTGTCACGCGCCTTCACCCATCATCTCAGGGCTTGAAGGAATTCATAAATGAGGTTAATACTCTCGCAACTCTGCAGCATCCAAACCTCTGTAAGTTGCTAGGATTTCATGCACGTGATGGTTCAGAACATAGACTGTTGGTTTATGAGAGGCTATACCATGGAAGCTTGGACCGCTTATTATACGGGAGATCTGATGGGCCATCAATTGATTGGAATACAAGAATGAAAATTGCAACGTGTGCTGCACAAGGCCTTACTTTCTTGCATGAAGAAGGGCCTTTTCAGGCAATGTATAATGAATTCTCAACAGCCAACATACAAATTGACAAGGATATCAGTGCCAAGCTCTCAGGATATGGTTGCGTTGGACATATTCCCGAAGAAGAGATTTCAAGCAGTTCACCTGCTGTTGGAAACCTTTCAATGGAGACTTTGGAGAAAGGAATGCTTACTCCAAAGAGCAATGTTTGGAGCTTTGGAATTATTCTTCTGGAGCTACTCACTGGAAGAAAGAATTTTGATAGCCGGCATCCCAAGGAAGAGAGGAATTTAGTCAAGTGGAGCAAGCCCTTCCTTGCTGATAATTATCGTCTGTCATTGATCATGGATCCTCAACTCAAAGGTCGCTTTCCTTCTAAAGCGGCGAGAACAATAGCTGACATTGCACAGAGATGCCTTCAAAAGGAGCCATCCGACAGACCCACCATGAGAACTGTTGTTGAGCAGCTCAAAACGATACAGGATGTGAAATACTCTTGCAGGTTCCCACTGCAGGAACCTGCACCATTCTCTGGAAAAAATATGTCAAGATCACCAAGTCTTAATGGCATCGTCTGCCCTGCCCCGAAGTTTAGTTACTCCCCTTCGCCACCATCACTCGCCCCGGCATCTGTCTCACCTCCAAGATGGTCTGGAGTGCCCCTCCTCCTTCCGCCCCGTGCTTGTTCTTCTACTCTCGCTTTGGAGGAGCTTGATAGGCAAGAAAGCCGCAAGTCATCATCCTCAGCCTCTAGGAGGGCTAGTGTTGAAGGATTTTGA 1641 0.4546 MGCFTVLKSKKKKSDQIAYVKRASQKEHVPTVLPEPQTHTRSLQSAPPSFRTRVKPIQSINKVTNNRTRALSAPSTLDAAEQDALAAVEYEEQEEPKYRTGSMKEQHSSSPQPLPLPSPQGSGALKAYASFKLGTASGPLNASGPLPLPPTGSLRNFPYDEIAAACHHFTSDRYMSESLSSTIYKASFGDDPSSSKKFEATVTRLHPSSQGLKEFINEVNTLATLQHPNLCKLLGFHARDGSEHRLLVYERLYHGSLDRLLYGRSDGPSIDWNTRMKIATCAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDISAKLSGYGCVGHIPEEEISSSSPAVGNLSMETLEKGMLTPKSNVWSFGIILLELLTGRKNFDSRHPKEERNLVKWSKPFLADNYRLSLIMDPQLKGRFPSKAARTIADIAQRCLQKEPSDRPTMRTVVEQLKTIQDVKYSCRFPLQEPAPFSGKNMSRSPSLNGIVCPAPKFSYSPSPPSLAPASVSPPRWSGVPLLLPPRACSSTLALEELDRQESRKSSSSASRRASVEGF* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3258 546 PANTHER OS01G0822200 PROTEIN 44 545 - -
Lja1g3258 546 MobiDBLite consensus disorder prediction 90 122 - -
Lja1g3258 546 Pfam Protein tyrosine and serine/threonine kinase 183 444 IPR001245 GO:0004672|GO:0006468
Lja1g3258 546 MobiDBLite consensus disorder prediction 35 56 - -
Lja1g3258 546 MobiDBLite consensus disorder prediction 522 546 - -
Lja1g3258 546 PANTHER OS01G0588500 PROTEIN-RELATED 44 545 - -
Lja1g3258 546 ProSiteProfiles Protein kinase domain profile. 169 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3258 546 Gene3D Phosphorylase Kinase; domain 1 150 250 - -
Lja1g3258 546 MobiDBLite consensus disorder prediction 15 56 - -
Lja1g3258 546 SUPERFAMILY Protein kinase-like (PK-like) 146 456 IPR011009 -
Lja1g3258 546 Gene3D Transferase(Phosphotransferase) domain 1 252 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3258 Lja-Chr1 40177658 40181827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3258 148 450 Receptor kinase-like Gene Family AT4G02010 37.217 2.15e-53 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Lja1g3258 PK_Tyr_Ser-Thr 1.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3258 - - gmx:100809117 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3258 1 40177658 40181827 Lja1g3258 1 40177658 40181827 ECH
Lja1g3258 1 40177658 40181827 Lja3g3818 3 75268883 75271547 PCT