Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3253 ATGATGATGCAATTCAGCAAATGCATACATCTATTGTTGTTTCTGATTGTTTTTGTTCAAGTTCTGCTACCAGTGTTCTCTGGTGGCCCTGGTTTCAGTGATGATGTATTGGGGTTGATTGTGTTCAAAGCTGGTTTACAAGACCCAAATCACAGACTCTCTTCATGGAATGAGGATGATTACAGTCCCTGCAACTGGGAAGGTGTGAAATGTGATCCTTCCACCAACAGGGTCTCTTCTCTTATCCTTGATGGGTTCTCTCTTTCTGGGCATGTTGATAGAGGCCTCTTGAATTTGCAGTCCCTTCAAATTCTCTCACTTTCTGGTAACAACTTCACAGGGCCTATAAACCCTGATCTCCCTCACCTTTGGAATCTGCAAGTTGTGGATTTCAGTGACAACAATCTCTCTGGGACAATCCCAGAAGGGTTTTTTCAACAATGTGGGTCTCTCAGATCAGTTTCCTTTGCTAAGAACAACCTCACAGGTAAGATTCCTGATTCTTTAACCTCCTGCAACACATTGTTAACTGTTAACTTTTCATCCAATCAACTTTATGGAGAATTGCCATCTGGGGTGTGGTCTTTGAGGGGATTGCAATCACTTGATCTGTCAAATAACCTTCTTGAGGGAGTGATTCCTGAGGGAATTCAGAATCTTTATGATATGAGGGAGTTGAGGTTACAGAAGAATCATTTTACTGGGAAAGTTCCTGAGGATATTGGATGGTGCATACTTCTGAAATCACTTGACTTGAGTGACAATTTTCTCTCCGGGGAGCTTCCTCAGTCGATGCAAAGACTCACTTCATGCAAATCACTTAGTTTGAATGGAAATTCATTCACAGGAAGCATTCCTGAATGGATTGGAGAGTTGAAAGATCTAGAGACATTGGATCTTTCTGCAAATAGATTTTCTGGTTGGGTTCCAAATTCATTAGGAAATCTAGACTCACTGAAAAGATTAAATTTATCCAGGAACCAGTTCACAGGAAACTTGCCTGATTCAATGGTGAATTGCACTATGCTTTTGGCTCTTGATATCAGCCACAATCAGTTAGAAGGCCTTCTTCCTTCATGGATTTTTGGGATGGATTTACAAAGTATCTCTCTTTCTGGGAACAGCTTCAATCCTTCACTCAAGTCCACACCTTCATATTATCATGGTATTGAGGTTTTGGATTTGTCATCCAATGCATTTTCTGGTGAACTCCCATCTGGGATTGGTAGTCTTATTAGTTTGCAAGTGTTAAATATGTCCACGAACAATATATCTGGTCCTATTCCTGTGGGCTTAGGAGAACTTAAATCAACATACATTATTGATTTAAGTCGTAACAAACTTAATGGAAGCATCCCTTCTGAAATAGCCGGAGCAATTTCGCTCATTGAACTGAGGTTACAAAAGAACCACCTAGGTGGGAGAATTCCAGCCCAAATTGAGAAGTGTTTATCTCTAAAATCTTTGATTCTTTCTCACAACAAGCTTACTGGTTCAATCCCTGCAGCCATTGCAAACCTAACCAATCTTCAACATGTAGATTTTTCATGGAATGAACTCTCTGGAAGTTTACCCAAGGAGCTGACAAATCTTTCCCATCTTTTATCATTTAATGTATCCCACAACCACTTTCAAGGTGAGCTACCAGTTGGTGGCTTCTTCAATACCATCTCTTCCTCTTCTGTAGCGGGTAACCGACTGTTGTGTGGTTCTGTTGTCAACCACTCCTGCCCATCTGTTCACCCAAAACCTATTGTATTAAATCCCAATTCTTCCGGTTCCAACTCTAGCATTGCCTCGCACAATCATCGCCACAAGATCATACTGAGTATATCGGCTCTTATTGCTATTGGAGCAGCTGCTTTTATTGCCATTGGTGTGGTGGCTATTACTGTCCTAAACGTCCGTGTGCGTTCTTCAATGGCGCGTTCCGCAGCTCCGTTTGCATTCTCTGCTGGTGAGGACTATAGTAATTCACCGGCAAATGATCCAAACTACGGCAAGCTTGTCATGTTTTCTGGTGATGCAGACTTTGCTGATGGAGCCCATAACCTTCTTAACAAAGACAGTGAAATAGGACGTGGCGGGTTTGGAGTTGTTTACCGCACATTCCTTCGAGACGGACACGCTGTTGCAATCAAAAAGCTTACAGTCTCAAGTTTGATCAAGTCTCAAGAAGAATTTGAGAGGGAAGTTAAAAAGCTTGGGAAGATCAGGCACCAGAATGTTGTAGCACTCGAAGGTTATTATTGGACTTCATCCTTGCAGCTACTCATTTACGAGTACCTATCGAAAGGAAGTTTGCATAAGCTTCTACATGATGATGATAACAGCAAAAATGTCTTCTCGTGGCGACAAAGGTTCAAGATTATCCTCGGCATGGCGAAAGGTTTAGCCCATTTGCACGAGATGAACATGATCCACTACAATCTCAAATCAACCAATGTTCTGATTGATTGTTCTGGTGAGCCAAAAATCGGAGATTTCGGCTTGGTGAAGCTCTTGCCAATGTTAGACCACTGTGTTCTGAGCAGCAAGATTCAAAGCGCGCTCGGATACATGGCGCCTGAGTTTGCTTGCCGCACAGTTAAGATAACCGAGAAATGCGACGTGTACGGTTTCGGGATCCTGATTCTCGAGGTCGTGACCGGAAAAAGACCGGTGGAGTACATGGAGGATGATGTTGTGGTTCTGTGTGAATTGGTGAGGGGTGCATTGGAGGAAGGGAAAGTGGAGCAATGTGTTGATGGGAGGCTATTGGGTAATTTTGCTGCGGAGGAAGCGATTCCTGTGATGAAATTGGGGTTGATTTGTGCCTCACAAGTGCCATCAAACCGTCCTGATATGGCTGAGGTATTGAATATATTGGAGTTAATCCAATGCCCTTCAGAAGGACAAGAGGAATTAGAGTGA 2913 0.4271 MMMQFSKCIHLLLFLIVFVQVLLPVFSGGPGFSDDVLGLIVFKAGLQDPNHRLSSWNEDDYSPCNWEGVKCDPSTNRVSSLILDGFSLSGHVDRGLLNLQSLQILSLSGNNFTGPINPDLPHLWNLQVVDFSDNNLSGTIPEGFFQQCGSLRSVSFAKNNLTGKIPDSLTSCNTLLTVNFSSNQLYGELPSGVWSLRGLQSLDLSNNLLEGVIPEGIQNLYDMRELRLQKNHFTGKVPEDIGWCILLKSLDLSDNFLSGELPQSMQRLTSCKSLSLNGNSFTGSIPEWIGELKDLETLDLSANRFSGWVPNSLGNLDSLKRLNLSRNQFTGNLPDSMVNCTMLLALDISHNQLEGLLPSWIFGMDLQSISLSGNSFNPSLKSTPSYYHGIEVLDLSSNAFSGELPSGIGSLISLQVLNMSTNNISGPIPVGLGELKSTYIIDLSRNKLNGSIPSEIAGAISLIELRLQKNHLGGRIPAQIEKCLSLKSLILSHNKLTGSIPAAIANLTNLQHVDFSWNELSGSLPKELTNLSHLLSFNVSHNHFQGELPVGGFFNTISSSSVAGNRLLCGSVVNHSCPSVHPKPIVLNPNSSGSNSSIASHNHRHKIILSISALIAIGAAAFIAIGVVAITVLNVRVRSSMARSAAPFAFSAGEDYSNSPANDPNYGKLVMFSGDADFADGAHNLLNKDSEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEEFEREVKKLGKIRHQNVVALEGYYWTSSLQLLIYEYLSKGSLHKLLHDDDNSKNVFSWRQRFKIILGMAKGLAHLHEMNMIHYNLKSTNVLIDCSGEPKIGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVVVLCELVRGALEEGKVEQCVDGRLLGNFAAEEAIPVMKLGLICASQVPSNRPDMAEVLNILELIQCPSEGQEELE* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3253 970 SMART LRR_typ_2 531 555 IPR003591 -
Lja1g3253 970 SMART LRR_typ_2 196 219 IPR003591 -
Lja1g3253 970 SMART LRR_typ_2 316 340 IPR003591 -
Lja1g3253 970 SMART LRR_typ_2 220 244 IPR003591 -
Lja1g3253 970 SMART LRR_typ_2 411 435 IPR003591 -
Lja1g3253 970 SMART LRR_typ_2 123 147 IPR003591 -
Lja1g3253 970 SMART LRR_typ_2 292 315 IPR003591 -
Lja1g3253 970 SMART LRR_typ_2 507 530 IPR003591 -
Lja1g3253 970 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 13 961 - -
Lja1g3253 970 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Lja1g3253 970 Gene3D Ribonuclease Inhibitor 310 583 IPR032675 -
Lja1g3253 970 SUPERFAMILY L domain-like 286 562 - -
Lja1g3253 970 ProSiteProfiles Protein kinase domain profile. 686 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3253 970 Gene3D Phosphorylase Kinase; domain 1 675 762 - -
Lja1g3253 970 SUPERFAMILY Protein kinase-like (PK-like) 687 960 IPR011009 -
Lja1g3253 970 Pfam Protein kinase domain 687 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3253 970 Gene3D Transferase(Phosphotransferase) domain 1 763 963 - -
Lja1g3253 970 Pfam Leucine rich repeat 272 329 IPR001611 GO:0005515
Lja1g3253 970 Pfam Leucine rich repeat 485 544 IPR001611 GO:0005515
Lja1g3253 970 PRINTS Leucine-rich repeat signature 292 305 - -
Lja1g3253 970 PRINTS Leucine-rich repeat signature 199 212 - -
Lja1g3253 970 Pfam Leucine Rich Repeat 199 220 IPR001611 GO:0005515
Lja1g3253 970 Pfam Leucine Rich Repeat 247 267 IPR001611 GO:0005515
Lja1g3253 970 SUPERFAMILY L domain-like 48 376 - -
Lja1g3253 970 Gene3D Ribonuclease Inhibitor 33 309 IPR032675 -
Lja1g3253 970 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 13 961 - -
Lja1g3253 970 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3253 Lja-Chr1 40130339 40134162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3253 12 969 Receptor kinase-like Gene Family AT3G56370 60.852 0.0 1139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Lja1g3253 Pkinase 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3253 - - gmx:100790365 1589.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3253 1 40130339 40134162 Lja1g3253 1 40130339 40134162 ECH