Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3252 ATGGAGCTTCACTACCACCTCCACATTCTCTCCACAACCCTGCTACTGTTTATGTTTCCTCATTCACTAAACTCCCAACAAATATACCTCAATAGTTCTGTCTATGACTGCACTAACAACCCTTCTGCACCAAAAGGGTACCTTTGCAATGGCCTTAAAAAATCATGCACTTCCTTCTTGGTTTTCACTTCAAAACCTCCCTATGATAACCCTGTAAGCATAGCTTACCTTCTTGGCTCTGAAGCATCCACTATAGCCTCAATGAACAATATCTCAATGAATGACAAAATCCCTTCCAACAAATCAGTCATTGTTCCTGTTTTCTGCTCATGTTCTGGGAACATCTACCAGCACAGCACACCTTACACTGTGGTCAAGAATGACACCTACTACATGCTTGTGAAAACGACTTACCAAGGCCTCACCACATGCCAGGCCATGATGGGTCAGAATTACTATGCTGCAGTGAGCATTGCAGTTGGTGCAGAGCTCACAGTTCCAGTGCTGTGTGCTTGCCCCACTTCAAACCTCACAACAAAAGGGGTCAGCTTCTTGCTGGTTCACATGGTTAGGGATGGTGAAACGGTTAAGTCCATAGGAGAGGCTTATGGTGTTGATGAACAAAGTATGGGAGAGGCTAATGGGTTGCCAGTGGTGCCATCAAGTGCAAACAATAGTGTGATCCTCAATGCCTTGACACCTATATTAGTGCCTCTGAGAGGCCAGAGTTGCAAGGAGAACCCAGATAAATTCTATTGTAAATGTTCCCAGGCGCTGCATGATGGAAGCTCCAAGGAGCTCTTCTGTGATGAATCAGATGGTCAAAAATTCCCTGCCAAGTTGGTTGTTTCATTAGGTGTTGGAATTGGTGCAGGCTTTCTGTGTTTGTTTCTTTCAGGCTACAAGTTATATCAATGCATACAGAAAAAGAGAAAGTGTGTTCATAAGGAAAAGCTATTCAGGCAAAACGGTGGCTACTTGTTACAAGAGAAGTTTTCATTATATGGAAATGGAGAAAAGGCAAAGCTTTTCACAGCAGAGGAGCTGCAAAGAGCAACAGATAACTACAACCGTAGCAGGTTTCTTGGTCAAGGTGGCTATGGCATGGTGTACAAAGGAATGCTACCAGATGGAACCATAGTTGCAGTTAAAAGGTCAAAAGAGATAGAAAGAAACCAGATAGATAGTTTTGTCAATGAAGTGGTCATTTTATCACAAATCAACCACAGGAACATTGTCAAACTCTTAGGTTGTTGTCTTGAGACAGAAACTCCATTACTAGTCTATGAATTCATCCCCAATGGAACTCTTTCCCAACATATCCATAGCTCATCATCACTTCCCTGGGAAAGTCGCCTTCGAATTGCATGTGAGGTTGCTGGAGCATTAGCATATATGCATTTTTCAGCTTCTATTCCCATCTTCCACATTTCTGATTTTGGGACATCAAAATCAGTTCCACAAGATAAAACTCACTTAACCACAAATGTGAAAGGAACTTTTGGGTACATAGACCCTGAATATTTCCAAACATGTCAATTTACTGATAAAAGTGATGTGTATAGTTTCGGGGTTGTGCTTGTAGAGCTTATAACTGGGAAAAAGCCCATTTCAATATTCTTCTTGTATGAAGATGAGGGTCAGAATCTGGTTGGTGAGTTCATTTCTCTGATGAAGGAGGACCAGCTTTCTCAGATTTTAGATGCCAGAGTGGTGAAGGAAGCAAGGACAGATGACATTCTTGCCATTGCAAGTCTTGCAAGGAGATGCTTGAGACTGAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCAGCAGAACTAGAAGCATTGAGAAAGGTACAAAATACCTTACAAATCAACCATGATCATGAGTCACCAGGTGATGGTCAATCAACTAAGTACACAAATAGTGACACAGAATCCAGAGAGGAAAGCATCTCGTTATCCTTACAACTAGAATCCACATCCTTCGAACTTCTAAGTACATGTTAG 1995 0.418 MELHYHLHILSTTLLLFMFPHSLNSQQIYLNSSVYDCTNNPSAPKGYLCNGLKKSCTSFLVFTSKPPYDNPVSIAYLLGSEASTIASMNNISMNDKIPSNKSVIVPVFCSCSGNIYQHSTPYTVVKNDTYYMLVKTTYQGLTTCQAMMGQNYYAAVSIAVGAELTVPVLCACPTSNLTTKGVSFLLVHMVRDGETVKSIGEAYGVDEQSMGEANGLPVVPSSANNSVILNALTPILVPLRGQSCKENPDKFYCKCSQALHDGSSKELFCDESDGQKFPAKLVVSLGVGIGAGFLCLFLSGYKLYQCIQKKRKCVHKEKLFRQNGGYLLQEKFSLYGNGEKAKLFTAEELQRATDNYNRSRFLGQGGYGMVYKGMLPDGTIVAVKRSKEIERNQIDSFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSQHIHSSSSLPWESRLRIACEVAGALAYMHFSASIPIFHISDFGTSKSVPQDKTHLTTNVKGTFGYIDPEYFQTCQFTDKSDVYSFGVVLVELITGKKPISIFFLYEDEGQNLVGEFISLMKEDQLSQILDARVVKEARTDDILAIASLARRCLRLNGKKRPTMKEVSAELEALRKVQNTLQINHDHESPGDGQSTKYTNSDTESREESISLSLQLESTSFELLSTC* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3252 664 Coils Coil 601 621 - -
Lja1g3252 664 Pfam Protein tyrosine and serine/threonine kinase 359 608 IPR001245 GO:0004672|GO:0006468
Lja1g3252 664 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Lja1g3252 664 MobiDBLite consensus disorder prediction 620 647 - -
Lja1g3252 664 ProSiteProfiles Protein kinase domain profile. 356 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3252 664 Pfam LysM domain 188 216 IPR018392 -
Lja1g3252 664 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 650 IPR045274 GO:0007166
Lja1g3252 664 Gene3D Phosphorylase Kinase; domain 1 330 431 - -
Lja1g3252 664 PANTHER LYSM TYPE RECEPTOR KINASE 26 650 - -
Lja1g3252 664 Gene3D Transferase(Phosphotransferase) domain 1 432 629 - -
Lja1g3252 664 SUPERFAMILY Protein kinase-like (PK-like) 340 608 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3252 Lja-Chr1 40119579 40122591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3252 286 612 Receptor kinase-like Gene Family AT1G16130 52.874 1.61e-123 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lja1g3252 PK_Tyr_Ser-Thr 8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3252 - - gmx:100795455 988.793