Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3248 ATGGAAACTATAGGTTATAGGAAGGCAATTGAGGAGCTAGTGAGAGGGCGTGAGTTTGCAAACCAGCTTAGACATGTCATCAATGGAACTGAGAATGAAAATGATGATAGGTCACTTGCTGAGAAGCTTCTGAAAGAGATCCACGTGTCCTTTTCCAACTCCCTCTTCATACTGAACCATTCCACTAGTAGTACTTCTGATCAATCTTCTTCCCATGATCATGAAGTGTGTGATGTGCAGCTCAAGTCTGAGGAGGACTCTCAATCTCAAGAGAGTAATTGCAAGAGGAGTTCTGATGTTAAGGAAAGAAGAGGGTGTTACAAGAGAAGAAGAACTTCAGAATCATGGGAGAGGGAGTCTGAAACTCCAATAGAAGATGGCCATCAATGGAGAAAGTATGGCCAAAAGGCTATCCTTAAGGCCAAATACCCAAGGAACTACTACAGATGCACTCACAAATATGACCAGGGATGCAGAGCAACAAAACATGTTCAAAGAATTCAAGAAAATCCACCTCTTCACAAGACCACATACTATGGCAACCACACTTGCAGAAGGTGTCAAACCCCTGAGATAATAGTGGATGATTCTGTTTGTCCTAATTCTGACTCTTCCATGTTCGTTAGCTTTGACAATTCTCTCCCAACCTCAGCCAAACAACAGTGCCCTTTTCTCTCATCTTTTCCATCACCTTCATCAGTGAAAAGGAAGTGCAAAGAGGAGGAAGAGGAGGAGGCCCCTCCTTCTATATCTTCCTCCAGTGATCACCTCATCCCTTCTTCTGAGCTCACTTTCCATGATTCTCCCCTAACCTTTGATTCAGATTACATGGGTGTGATTCCTGATGTGTTGTATGGTTCTGATGAGCTTGATGATGTCTTTGAGCCCTTCCTTGAAAGTCTTAGATGA 909 0.4312 METIGYRKAIEELVRGREFANQLRHVINGTENENDDRSLAEKLLKEIHVSFSNSLFILNHSTSSTSDQSSSHDHEVCDVQLKSEEDSQSQESNCKRSSDVKERRGCYKRRRTSESWERESETPIEDGHQWRKYGQKAILKAKYPRNYYRCTHKYDQGCRATKHVQRIQENPPLHKTTYYGNHTCRRCQTPEIIVDDSVCPNSDSSMFVSFDNSLPTSAKQQCPFLSSFPSPSSVKRKCKEEEEEEAPPSISSSSDHLIPSSELTFHDSPLTFDSDYMGVIPDVLYGSDELDDVFEPFLESLR* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3248 302 Pfam WRKY DNA -binding domain 125 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3248 302 ProSiteProfiles WRKY domain profile. 119 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3248 302 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 7 278 - -
Lja1g3248 302 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 278 IPR044810 GO:0003700
Lja1g3248 302 SUPERFAMILY WRKY DNA-binding domain 121 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g3248 302 MobiDBLite consensus disorder prediction 71 97 - -
Lja1g3248 302 MobiDBLite consensus disorder prediction 239 262 - -
Lja1g3248 302 Gene3D WRKY domain 110 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g3248 302 SMART WRKY_cls 124 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3248 302 MobiDBLite consensus disorder prediction 62 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3248 Lja-Chr1 40075190 40079421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3248 8 221 WRKY Transcription Factor Family AT3G56400 38.739 6.57e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g3248 WRKY 3.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3248 - - gmx:100170682 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3248 1 40075190 40079421 Lja1g3248 1 40075190 40079421 ECH
Lja1g3248 1 40075190 40079421 Lja3g4790 3 89909759 89912122 PCT