Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3242 ATGGTTTCCTCTCAGCTTTCTAGTTTGACTACTGCTGGTTTATGCAAACCTTTACAGACTCAACTGCTCTTTCCTGCAAATGTTCCTGAAAGTTTAAACACAGATCACCCTGAGCTAGATTTCTCTGATGTCTTTGGTCCTCTTACAGTAGAAGTCAATAACATTGATTCTGCCACTGGTGAGCCTGTGGATGAGTTGAGCGAGCTGGTTTATGATGAGCCGGCAGTTATTTATACCCGCTCACATTCTCTGGTTGGCCCTTCTGCTTGTGTCAGTCAATCACTTAAGCTTAGCAAACTCACCATACATGAGGCTGAGGATTCATTGGAACTAGTAGTGGATGTTACTAGGGAGATCATTAAAGACATTGACGAATCTTCCCTCGACAATGTTATCATCGAGGAATCCTTGGAAGGTGAAGACAGGAATCTCATGGAGATCCAGAAAGTTAGCATTGAAGACTTTGAAGTTTTGAAGGTTGTGGGGCAGGGTGCATTTGCAAAAGTATATCAGGTGAGGAAAAAGGGCACTTCAGAAATATATGCTATGAAGGTTATGCGTAAGGACAAAATTGTGGAAAAGAACCATGCTGAATACATGAACGCTGAGAGGGAGATTTTGACAAAGATAGAGCACCCCTATATTGTACAACTCAGATACTCTTTTCAGACAAAATACAGATTGTATCTTGTGCTGGATTTCGTAAATGGGGGTCATCTATTCTTTCAGCTTTATCACCAGGGCCTTTTCAGAGAGGATCTAGCACGTGTATACGCAGCTGAGATTGTTTCTGCAGTCTCCCATCTCCACTCAAAGGGAATCATGCACAGGGATCTAAAACCTGAAAATATCCTTATGGATGCTGATGGCCATGTTATGTTGACTGATTTTGGCTTAGCAAAACAATTTGAAGAAAGTACGAGATCTAATTCGATGTGTGGTACATTAGAGTACATGGCACCTGAAATTATTCTTGGCAATGGGCATGATAAGGCTGCCGATTGGTGGAGTGTGGGTGTCCTGCTGTTTGAGATGCTTACCGGAAAGCCGCCCTACTGTGGAGGGAACCGTCAGAAAATTCAGCAGAAGATAGTGAAAGACAAGATTAAGCTGCCGGCATTTTTGTCAAGTGAAGCCCATGCACTGTTGAAAGGGCTGCTAACAAAGGAGGCAAGTAAGCGCTTAGGTTGTGGGCTCAAGGGGGTTGAGGAAATTAAAGGCCACAAATGGTTCAAACCAATCAATTGGAAGAAGCTGGATGCTCGCGAAATCCAACCAAGCTTCCGGCCAGAAGTAGCTGGGAGGAACTGTGTTGCCAACTTTGATAAGTGCTGGACTGATATGTCTCTTATTGACTCCCCAGCTGCCAGCCCAAATGGTGTAAATCCCTTCAAGGATTTCTCTTATGTGAAGCCTGCCGCCTCTTTTCTTCAAAGGAATAGTCCTGCATGCTAA 1455 0.4378 MVSSQLSSLTTAGLCKPLQTQLLFPANVPESLNTDHPELDFSDVFGPLTVEVNNIDSATGEPVDELSELVYDEPAVIYTRSHSLVGPSACVSQSLKLSKLTIHEAEDSLELVVDVTREIIKDIDESSLDNVIIEESLEGEDRNLMEIQKVSIEDFEVLKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDKIVEKNHAEYMNAEREILTKIEHPYIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARVYAAEIVSAVSHLHSKGIMHRDLKPENILMDADGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGNGHDKAADWWSVGVLLFEMLTGKPPYCGGNRQKIQQKIVKDKIKLPAFLSSEAHALLKGLLTKEASKRLGCGLKGVEEIKGHKWFKPINWKKLDAREIQPSFRPEVAGRNCVANFDKCWTDMSLIDSPAASPNGVNPFKDFSYVKPAASFLQRNSPAC* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3242 484 SUPERFAMILY Protein kinase-like (PK-like) 152 469 IPR011009 -
Lja1g3242 484 Gene3D Phosphorylase Kinase; domain 1 152 450 - -
Lja1g3242 484 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 1 482 - -
Lja1g3242 484 SMART pkinase_C_6 412 471 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja1g3242 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Lja1g3242 484 PANTHER RIBOSOMAL PROTEIN S6 KINASE 1 482 - -
Lja1g3242 484 Gene3D Transferase(Phosphotransferase) domain 1 235 430 - -
Lja1g3242 484 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 479 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja1g3242 484 ProSitePatterns Protein kinases ATP-binding region signature. 161 184 IPR017441 GO:0005524
Lja1g3242 484 Pfam Protein kinase domain 155 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3242 484 ProSiteProfiles Protein kinase domain profile. 155 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3242 484 CDD STKc_AGC 161 411 IPR045270 GO:0004674|GO:0005524
Lja1g3242 484 SMART serkin_6 155 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3242 Lja-Chr1 40014735 40017467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3242 1 481 AGC Kinase Gene Family AT3G08720 69.959 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Lja1g3242 Pkinase 2.4e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3242 K04688 - gmx:100804819 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3242 1 40014735 40017467 Lja1g3242 1 40014735 40017467 ECH