Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3241 ATGGCTTCCATGCTCCCAACAACTGCAACTACACTTCAACACAATCACACAATCTGCTTCTCTCCTCTGAAACCCACCTCCCCATGTAACATTTCTTTCTTAACAAATAACAGAAACTCAGCAAAGTGCAGTGCAATTTTTGATAGCATCCCCAAAGACTTGATGGGGAGCACTTTTTATTTGGACCAGTTTCCTGTATTCAAATCTGTCTTGTTGAAGTTTCAGAGTGTAAATGAAGACTTATCAGACATGCAGAGGTGGGGGTTTGTGATTTTGGCTGGGATGGCATGGGCTTACTTAACTGCAAGGCCAGGTGTTCTTGTTGGAGCCATTGATGCATACTTTTTGGCTCCAATGCAATTGGTTTTGGACAGTTTATCAGGAAGGAGAAATCTGAAGAGGACTGATTTCCTGATTGGAGATAAGCTGGGAGAAGGGTCATTTGGTGTTGTTTATTCAGGTGTTTTGGTGCCAAAGAATGTAGATGTAAAAGAGAGGGTGCAAAAGAGTGGAAGAGGCACAAAGTTGGATTTCAAATATAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCTGAAGAATTTGGTGATTTTGAGGAGTGGTTCAATTACAGACTCTCTAGAGCAGCTCCTGAAACATGTGCTAAGTTCATTGGAAGTTTTGTAGCCGATAAAAGCAGTTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAAACCTTTCTCTTGCTGATTACATGGCTGATCGCAACTTCCCTTCAAACTTAGAGTCTGTCATGTTTCAACGCGCCTTGCAAGGTGTAGACTCTTCAAAACGAAATGCATTGATCATCAAGCAAATAATGCGCCAGATCATTACATCTCTGAAGAAAATTCACAACACCGGCATTGTTCACCGGGATGTAAAGCCTGCTAACTTGGTGGTTACCAAACGGGGGCAGATAAAACTCATTGATTTTGGTGCAGCAACTGACTTAAGGATTGGAAAGAATTACGCTCCTGATTTTACGCCTTTGGATCGCGACTACTGCCCCCCTGAATTATATGTGCTACCAGAAGAAACACCAAGTCTTCCATCAGAGCCAATTGCAGCTTTACTTTCACCAATCTTGTGGCAGTTAAATAGTCCCGACCTGTTCGATATGTATTCTGCTGGGATTGTACTCATGCAAATGGCAGTACCAGCCTTGAGGTCTCCAGCAACTTTGAAGAATTTCAATCTGGAAATAAAAACATTCGGATATGATTTGAACAAATGGAGGGACTCAACTCGCATCAAGTCTGACTTCCAAATTCTAGATGCTGACTCTGGTAGAGGATGGGACTTGGCGACAAAGCTTATCTCCAAAAGAGGTTCTCAAGGAAGAGGACGTTTATCCGCTGCTGCAGCTTTGAGGCATCCTTATTTCCTTCTCGGTGGTGATCAGGCAGCTGCTGTGCTTTCAAAATTAAGATTAAGTACAAAGTGA 1494 0.423 MASMLPTTATTLQHNHTICFSPLKPTSPCNISFLTNNRNSAKCSAIFDSIPKDLMGSTFYLDQFPVFKSVLLKFQSVNEDLSDMQRWGFVILAGMAWAYLTARPGVLVGAIDAYFLAPMQLVLDSLSGRRNLKRTDFLIGDKLGEGSFGVVYSGVLVPKNVDVKERVQKSGRGTKLDFKYKDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFIGSFVADKSSSQFTKGGKWLVWKFEGNLSLADYMADRNFPSNLESVMFQRALQGVDSSKRNALIIKQIMRQIITSLKKIHNTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYAPDFTPLDRDYCPPELYVLPEETPSLPSEPIAALLSPILWQLNSPDLFDMYSAGIVLMQMAVPALRSPATLKNFNLEIKTFGYDLNKWRDSTRIKSDFQILDADSGRGWDLATKLISKRGSQGRGRLSAAAALRHPYFLLGGDQAAAVLSKLRLSTK* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3241 497 Pfam Protein kinase domain 285 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3241 497 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 495 IPR044803 GO:0004674|GO:0009579
Lja1g3241 497 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 495 - -
Lja1g3241 497 Gene3D Phosphorylase Kinase; domain 1 125 245 - -
Lja1g3241 497 ProSiteProfiles Protein kinase domain profile. 137 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3241 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Lja1g3241 497 SUPERFAMILY Protein kinase-like (PK-like) 135 479 IPR011009 -
Lja1g3241 497 Gene3D Transferase(Phosphotransferase) domain 1 270 480 - -
Lja1g3241 497 SMART serkin_6 137 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3241 Lja-Chr1 40010969 40013825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3241 137 334 MAP Kinase Kinase Kinase AT3G13530 25.373 6.37e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Lja1g3241 Pkinase 1.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3241 - - gmx:100795624 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3241 1 40010969 40013825 Lja1g3241 1 40010969 40013825 ECH
Lja3g4789 3 89900462 89903801 Lja1g3241 1 40010969 40013825 PCT