Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3233 ATGATGCCCCAGTCCTACTTAGCCACAATACCAATTTTGCTACTCCTGGTTGTGTTTCCTCAAACTAAATCTGATCTACATTCAGAAAAGCAAGCCCTACTTGATTTTGCTTCTGCACTTCATCATGGTCATAAAATCAACTGGAACTCTAGTACCTCAGTGTGCACTTCTTGGGTGGGAGTTACATGCAGCTCTGATGGCTCTCATGTGCTTTCTTTGCGCCTTCCCGGTGTTGGACTGCGCGGTTCTCTCCCAGAAAACACGCTCGGTAAGCTGAGTGGCCTCATCAGTCTGAGCCTCAGGTCCAACACCTTGAGTGGGAATCTTCCAATTGACATGCTTTCCCTTCCTTCTCTGCGCTTTGTGTATCTGCAAAATAACAGCTTTTCAGGTGACATTCCATATTCGCTTCCGCCCCGGCTTCTCTTTCTTGATTTGTCCTATAACTCCTTCACAGGGAAAATTCCATCCTCAATCCAAAACTTGACATATCTAATAGGACTGAACCTCCAGAATAACTCCCTCAGAGGACCTATTCCTGATGTTAACCTTCCTACCCTTGAGGATTTGAATTTGAGCTTCAATTACCTGAATGGTTCTATCCCTTCAGAGCTTCAGAAGTTTCCTGCATCCTCATTTAAAGGGAATTTGAAGTTATGTGGAGCACCATTGGAGCCATGTTCTTCAGCTTCCCCTCCTCTCACATTGTCACCATCAATAGTTTCAACAAAACCATGTGATCTTTCAAGCAAGAAGCTGAGTAGAGGAGGCAAAATAGCTATAATTGCTTCAGGGTGTATCTTCACACTGCTGTTCCTTCCAGTTCTCATAGCAGTTTTCTGCTGTTTCAAGAAAAAAGGAGGTGAACAAAATTTAGTTCATAAAGAGAAGGGTGGAAAGTTGAGGGAGGGTTTTGGCAGTGGTGTGCAAGAACCTGAGAGGAACAAGCTAATATTCTTTGAAGGTTGTTCTAACAACTTTGATCTTGAGGATTTACTAAGAGCTTCAGCTGAAGTGCTTGGGAAGGGAAGTTGTGGAACAACTTACAAAGCCATTTTGGAGGAAGGGACAACAGTGGTTGTGAAGAGATTGAAAGAAGTGGCTGTGGGGAAAAAGGAATTTGAACTGCAAATGGAGATTGTCCAGAGGCTTGATCACCACCCAAATGTGGTTCCAATTCGTGCTTACTACTATTCCAAGGATGAAAAACTAGTGGTTTATGACTACTTTACTTGTGGCAGCTTTTCCAAGTTGTTGCATGGAACAAGGGAAACGGGAAGAACTCCACTAGATTGGCATTCCAGATTGAAGATAGTGGCTGGAGCAGCAAGGGGCATTGCATATATCCATTCAGCCAATGGAAAGAAATTTGTCCATGGCAACATAAAATCATCTAATGTGCTTCTCTCAGTGGATCTACAAGGCTGCATATCAGATTTTGGCTTAACTCCTCTAACAACTTTTTGTGTCTTCTCCAGAAGTGCAGGCTACAAAGCACCTGAGGTTATTGAAACCAGAAAATCCACCCAAAAATCTGATGTGTACAGCTTTGGTGTTCTCCTTCTTGAGATGCTGACTGGGAAAGCACCAGTTCAGTGTTCAGGGCATGATGATGTGGTTGTTGATCTTCCAAAGTGGGTCCAATCTGTTGTCAGAGAGGAGTGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGATATCCAAACATTGAAGAAGAACTTGTGCAGATGTTACAACTGGCTATGGCATGTGTTGCAGAGATGCCTGACATGAGGCCTTCAATGAAGGAAGTTGTTATGCTAATTGAAGACATCAGAGAATCCACTTCTTAG 1833 0.4326 MMPQSYLATIPILLLLVVFPQTKSDLHSEKQALLDFASALHHGHKINWNSSTSVCTSWVGVTCSSDGSHVLSLRLPGVGLRGSLPENTLGKLSGLISLSLRSNTLSGNLPIDMLSLPSLRFVYLQNNSFSGDIPYSLPPRLLFLDLSYNSFTGKIPSSIQNLTYLIGLNLQNNSLRGPIPDVNLPTLEDLNLSFNYLNGSIPSELQKFPASSFKGNLKLCGAPLEPCSSASPPLTLSPSIVSTKPCDLSSKKLSRGGKIAIIASGCIFTLLFLPVLIAVFCCFKKKGGEQNLVHKEKGGKLREGFGSGVQEPERNKLIFFEGCSNNFDLEDLLRASAEVLGKGSCGTTYKAILEEGTTVVVKRLKEVAVGKKEFELQMEIVQRLDHHPNVVPIRAYYYSKDEKLVVYDYFTCGSFSKLLHGTRETGRTPLDWHSRLKIVAGAARGIAYIHSANGKKFVHGNIKSSNVLLSVDLQGCISDFGLTPLTTFCVFSRSAGYKAPEVIETRKSTQKSDVYSFGVLLLEMLTGKAPVQCSGHDDVVVDLPKWVQSVVREEWTAEVFDLELMRYPNIEEELVQMLQLAMACVAEMPDMRPSMKEVVMLIEDIRESTS* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3233 610 Gene3D Ribonuclease Inhibitor 139 229 IPR032675 -
Lja1g3233 610 PANTHER OS05G0480400 PROTEIN 10 609 - -
Lja1g3233 610 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Lja1g3233 610 Gene3D Phosphorylase Kinase; domain 1 303 409 - -
Lja1g3233 610 Gene3D Transferase(Phosphotransferase) domain 1 411 610 - -
Lja1g3233 610 Gene3D Ribonuclease Inhibitor 27 138 IPR032675 -
Lja1g3233 610 CDD STKc_IRAK 340 605 - -
Lja1g3233 610 Pfam Protein kinase domain 337 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3233 610 SUPERFAMILY L domain-like 44 226 - -
Lja1g3233 610 PANTHER OS05G0588300 PROTEIN 10 609 - -
Lja1g3233 610 SUPERFAMILY Protein kinase-like (PK-like) 338 601 IPR011009 -
Lja1g3233 610 ProSiteProfiles Protein kinase domain profile. 334 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3233 Lja-Chr1 39930218 39932473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3233 24 610 Receptor kinase-like Gene Family AT5G58300 61.409 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja1g3233 Pkinase 2.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3233 - - gmx:100796675 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3233 1 39930218 39932473 Lja1g3233 1 39930218 39932473 ECH