Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3227 ATGCCGGATCCCAGAATTCATGGATGTGTCTTTGCTGTTATGTTTTGTTTTGTCATCCTCACAGCAGACTCTCAACAAACAGATCCTTCAGAAGTAAAAGTGCTGCTAGGCATCAGAAAGAGTTTGATTGATCCAAAGGGTCACCTGAAGAACTGGAATAAGAGTGACCCGTGTGCAGCGAATTGGACTGGGGTTTGGTGTTTTCGTAAGAAAGGGGCTGATGGTTACTTCCATGTTCGTGAACTCTACCTGATGAATTTGAATCTCTCGGGAAGTTTAGCACCTCAGCTTGGTCAGCTCTCCCAACTTCATATACTGAGTTTCATGTGGAACAACCTCACAGGCACCATACCCAAGGAGATTGGAAATATGACATCCTTGTTACTCTTGCTCTTGAATGGGAACCAGTTATCTGGTAGTTTACCAGATGAGCTTGGAAACCTTTCAAATATGACTAGACTCCAAGTTGATGAAAACCAATTGTCAGGTCCTATACCAGAATCATTTGCCAACATGATCAATGTTAGACACCTTCACATGAACAACAACTCATTGAGTGGTCAACTTCCATCCAACCTTTCAACCCTACCCAATCTTCTGCACTTGCTGTTGGACAACAATAACTTATCTGGACATCTGCCAGCAGAATTCTCCAAGATACACACTTTAATTATCCTCCAACTTGATAACAATAATTTCAGCGGGAATGGAATACCTTCTAACTATGTAAACTTATCCAGCCTAGTAAAACTGAGTCTAAGAAACTGCAGTCTGCAAGGACCTATTCCTGATTTCAGTTCAATGCCAAAACTTAGCTATTTAGATCTTAGCTGGAACCAATTTACTGGATCCATTCCATCAAATAAACTTGCAGACCATATGACAACTATTGATGTGTCCAATAATCATCTCAATGGATCTATTCCTCAGAACTTCTCATATCCTCATCTCCAAAAATTGGCACTGGAGAACAATTTACTGACTGGGTCTATCACTGCTAGCTTTTGGCAGAACATATCCCTCAACAATAGTGCAAAACTTACAATTAATCTTCAGAACAACTTACTTTCGGATGTTGTGGGAAATCTGAAAACCCCTGCCAATGTTACCTTGAGGCTTTCTGGAAATCCTGTCTGCAAGGATTCAAACATACAAAGCATTGATCAATATTGTGGACATGAAGGAGATGAAGTAGACATTAATTCAAATTCAAAAATTGAATGTCAAGTTCAATCTTGTCCATTGGATAATTTCTATGAATATGCCCCATCTTCTCCAGTTCCTTGCTTTTGTGCAGCACCTCTGAGAATAGGATACAGGCTCAAAAGTCCAAGTTTTTCCTTTTTTCCACCCTATATAACTGATTTTGAGTCATATATTACTGAGTCCTTAGACTTAAACATCTATCAGTTATCAATAGATTCATATGCTTGGGAAGAGGGACCTCGTCTTAACATGCACTTAAAATTTTTTCCCTCGTACAATGATTCTGAGTCCAATACGTTCAATGCAAGTGAGGTCCATCGCATTGGAGACATGTTTACATCATGGCATTTTCCTCGTACCGATTTTTTTGGACCGTATGAACTTCTGAACTTCACTCTTCTTGGACCTTATGCACATTTAATTGCTGATTCAGAGAGGAGATCAAAAACAAGTACAGGAATAATAGTTGCTATTATTATAGGAGCTGTTGCCTGTGTTTTAGCAATATCTGCAATAGTCATTCTCTTAACTTATAGAAGAAATGGGAAATACAAGCACTTGATTTCCAGGAAACGCATGTCCACTAGCATACACATGAAAGTAGATGGCATGAAAGCGTTTACTTATAAAGAATTGGCTCTTGCTACTAACAAATTTGATATCTCTAATAAAGTTGGACAAGGAGGCTATGGGAATGTCTATAAAGGCATTTTATCAGATGATACATTTGTTGCCGTTAAGCGAGCAGAAGAAAGTTCATTACAAGGCCAAAAGGAGTTTTTGACTGAGATTGAGCTTCTATCAAGGTTACATCATCGAAATCTTGTTACACTGATTGGCTACTGTGATGAAGAAGGGGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGCAAAAGATCAAAAACCAAGGAAAGTCTAGGTTTTGGTATGAGATTGCGGGTTGCCATGGGTGCAGCCAAAGGCATAGTATATCTGCATACAGAGGCTAATCCTCCTATATTCCACCGAGACATCAAAGCCAGTAATATACTTTTGGACTCCAAGTTCACAGCGAAAGTGGCCGATTTCGGACTGTCGCGACTTGTACCGTACTTAGATGAAGAAGGAACTGAACCTAAATATGTGTCAACAGTTGTGAAGGGAACACCAGGTTACATGGACCCAGAGTATTTGTTGACTCATAAGTTGACTGATAAAAGTGATGTGTATAGCTTAGGGATTGTGTTTTTGGAGCTTTTGACCGGCATGCATCCAATATCTCATGGGAAAAACATTGTCCGTGAGGTTAATTTGGCTTGTCAGTCTGGCATGGTTCATTCCATTATAGACAGCAGAATGGGTTTCTATCAATCTGAATGCGTGGAGAAGTTTTTAACTTTGGCCCTCAGTTGTTGCCAAGACAATCCAGAGGAGAGACCATCAATGTTAGATGTGGTGAGGGAACTGGAAGATATTATGGCAATGTTACCAGAAACTGAAACTAGCTTCTCAGATGTTACCTTAGACAATTCTGGTAAAATGGCACCCTCATCATCATCATCACCATCAACCTCAGGATTCAATGTGACGAGGAAGGATCAGCACATGTCCGAATATGTCTTAGGAAGTGATCTTGTCAGTGATGTCATTCCCACCATTGTTCCTCGCTGA 2883 0.4017 MPDPRIHGCVFAVMFCFVILTADSQQTDPSEVKVLLGIRKSLIDPKGHLKNWNKSDPCAANWTGVWCFRKKGADGYFHVRELYLMNLNLSGSLAPQLGQLSQLHILSFMWNNLTGTIPKEIGNMTSLLLLLLNGNQLSGSLPDELGNLSNMTRLQVDENQLSGPIPESFANMINVRHLHMNNNSLSGQLPSNLSTLPNLLHLLLDNNNLSGHLPAEFSKIHTLIILQLDNNNFSGNGIPSNYVNLSSLVKLSLRNCSLQGPIPDFSSMPKLSYLDLSWNQFTGSIPSNKLADHMTTIDVSNNHLNGSIPQNFSYPHLQKLALENNLLTGSITASFWQNISLNNSAKLTINLQNNLLSDVVGNLKTPANVTLRLSGNPVCKDSNIQSIDQYCGHEGDEVDINSNSKIECQVQSCPLDNFYEYAPSSPVPCFCAAPLRIGYRLKSPSFSFFPPYITDFESYITESLDLNIYQLSIDSYAWEEGPRLNMHLKFFPSYNDSESNTFNASEVHRIGDMFTSWHFPRTDFFGPYELLNFTLLGPYAHLIADSERRSKTSTGIIVAIIIGAVACVLAISAIVILLTYRRNGKYKHLISRKRMSTSIHMKVDGMKAFTYKELALATNKFDISNKVGQGGYGNVYKGILSDDTFVAVKRAEESSLQGQKEFLTEIELLSRLHHRNLVTLIGYCDEEGEQMLVYEFMPNGTLRDWISGKRSKTKESLGFGMRLRVAMGAAKGIVYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLVPYLDEEGTEPKYVSTVVKGTPGYMDPEYLLTHKLTDKSDVYSLGIVFLELLTGMHPISHGKNIVREVNLACQSGMVHSIIDSRMGFYQSECVEKFLTLALSCCQDNPEERPSMLDVVRELEDIMAMLPETETSFSDVTLDNSGKMAPSSSSSPSTSGFNVTRKDQHMSEYVLGSDLVSDVIPTIVPR* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3227 960 CDD STKc_IRAK 627 896 - -
Lja1g3227 960 Gene3D Phosphorylase Kinase; domain 1 591 696 - -
Lja1g3227 960 SUPERFAMILY L domain-like 238 385 - -
Lja1g3227 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672|GO:0006468
Lja1g3227 960 SUPERFAMILY L domain-like 27 287 - -
Lja1g3227 960 Gene3D Ribonuclease Inhibitor 236 420 IPR032675 -
Lja1g3227 960 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Lja1g3227 960 ProSiteProfiles Protein kinase domain profile. 621 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3227 960 Pfam Protein kinase domain 623 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3227 960 SMART serkin_6 621 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3227 960 Gene3D Ribonuclease Inhibitor 28 235 IPR032675 -
Lja1g3227 960 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 9 929 - -
Lja1g3227 960 MobiDBLite consensus disorder prediction 913 933 - -
Lja1g3227 960 ProSitePatterns Protein kinases ATP-binding region signature. 627 649 IPR017441 GO:0005524
Lja1g3227 960 Gene3D Transferase(Phosphotransferase) domain 1 697 912 - -
Lja1g3227 960 SUPERFAMILY Protein kinase-like (PK-like) 606 923 IPR011009 -
Lja1g3227 960 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 929 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3227 Lja-Chr1 39868193 39877569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3227 5 905 Receptor kinase-like Gene Family AT5G01950 60.265 0.0 1086
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Lja1g3227 Pkinase 9.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3227 - - gmx:100815005 1447.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3227 1 39868193 39877569 Lja1g3227 1 39868193 39877569 ECH