Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g3221 | ATGAAACTTCTTTCATCACTTATTCTAGCTGTGGTGTGCATGTGCGGCATATTTACTCTTTGCATTATATTTTACGTGATCTATGATATATATATTTCTTTCAAGCCGAAGGTCAAGGGGTTGTCCCCTTTGGAGTTGGAGAAGCTTCCCAGAATCACCGGGAAAGAATTGGAACAAACCACCGAATGCGTCGTGTGCCTTGACGACATTGAGAGCGACCAACCGACTCGACTGCTTCCCGATTGCAACCACGCTTTCCATCTCCAGTGTGTTGACACATGGCTCTCCAAGAACCCACACTGCCCCGTTTGTAGAGCCAACCTTGGATCCCCAGTTTCTCAATGCTGA | 348 | 0.4684 | MKLLSSLILAVVCMCGIFTLCIIFYVIYDIYISFKPKVKGLSPLELEKLPRITGKELEQTTECVVCLDDIESDQPTRLLPDCNHAFHLQCVDTWLSKNPHCPVCRANLGSPVSQC* | 116 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g3221 | 115 | Pfam | Ring finger domain | 62 | 105 | IPR001841 | - | |
| Lja1g3221 | 115 | SMART | ring_2 | 63 | 104 | IPR001841 | - | |
| Lja1g3221 | 115 | SUPERFAMILY | RING/U-box | 62 | 111 | - | - | |
| Lja1g3221 | 115 | ProSiteProfiles | Zinc finger RING-type profile. | 63 | 105 | IPR001841 | - | |
| Lja1g3221 | 115 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 111 | IPR013083 | - | |
| Lja1g3221 | 115 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 3 | 110 | - | - | |
| Lja1g3221 | 115 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED | 3 | 110 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g3221 | Lja-Chr1 | 39803951 | 39804298 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja1g3221 | 3 | 115 | C3H Transcription Factor Family | AT5G42200 | 41.985 | 6.56e-30 | 103 |