Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3219 ATGGAAGGGAACACAGACATGTTCAGAGGTTCTCCAACATCATCATCATCATCGTCGTCGTTGAATTTATCTTCCAATTCGAGAAGATTCGGGTTATTATCCGCGTCGAACATCATTCAGGCGCCGTTATCGTTGCTTCTTGAATATTCCGGTATTCTCCCTCCGAGGTCCAACCAGCATCAGCCGAATTCCGACGTCGCTGCTGCTCCCAGCGACGGCGAGGTTTCGATCAGAATCATCGGTTCCGCGGAGCACGATCATCAGCGCAGGGAAGAGCAGACTCTTTCTGATGGGGACTTGGCTGTGGGGAATGACGCTGTAGACCCTTCACAGGGGGGTGATGCTGACGGCGGCGTTGGCGTTTCGCGGACGGGAAATGGCGGCGGGAACGCTGAAGCTGGGGGTGGCCGCGGGGAAGGAGCAGGGCCCAATGGGAGGGATTCTTCATACCAGAGATATGATATTCAGCATGCAGCTAGGTGGATTGAGCAGGTCTTGCCCTTTTCTTTGCTTCTCTTGGTTGTCTTCATCAGGCAGCATTTGCAAGGGTTTTTTGTTACAATTTGGATTGCTGTTGTCCTTTTCAAGTCGAACGACATTCTGCGGAAACAAACGGCACTGAAGGGAGAGAGGAAAGTACCTGTTTTGATTGGGTTTTCTGTTGCTTTCGCGCTTCACGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTAATGTATCCATTGGTCATGCTCCCCCCCAAAGAGATACCACCATTCTGGCATGCAATTTTCATTATCATGGTGAATGATACTTTAGTCCGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTAATATATTACAAGAACAGCAGAGGCCGGAATTATCGTAAGCAGGGGCAAATGTTGACCCTAGTTGAATACCTGCTTCTGCTTTATCGGGCCTTGTTACCAGCACCAGTTTGGTATCGTTTCTTCCTGAATAAAGAATATGGAAGCCTCTTTTCATCATTGATGACAGGATTGTATCTAACATTTAAGCTCACATCTGTTGTTGAAAAGGTGCAATCTTTCTTTGCTGCAGTGAAAGCATTGTCACGTAAAGAAGTGCACTATGGGGCTCATGCAACATCAGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATCTGTCAGGAGAAGATGCATGCCCCAATCTTGCTCCGTTGTAAACACATTTTCTGTGAAGACTGTGTATCTGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCTGCAGATCTCAGGTCATTTGGTGATGGCTCTACTAGTTTGTTTTTCCAGTTATTCTGA 1335 0.4734 MEGNTDMFRGSPTSSSSSSSLNLSSNSRRFGLLSASNIIQAPLSLLLEYSGILPPRSNQHQPNSDVAAAPSDGEVSIRIIGSAEHDHQRREEQTLSDGDLAVGNDAVDPSQGGDADGGVGVSRTGNGGGNAEAGGGRGEGAGPNGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAVVLFKSNDILRKQTALKGERKVPVLIGFSVAFALHVVGVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMVNDTLVRQAAMVFKCILLIYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPAPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAHATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3219 444 MobiDBLite consensus disorder prediction 7 25 - -
Lja1g3219 444 MobiDBLite consensus disorder prediction 1 25 - -
Lja1g3219 444 ProSiteProfiles Zinc finger RING-type profile. 383 421 IPR001841 -
Lja1g3219 444 ProSitePatterns Zinc finger RING-type signature. 398 407 IPR017907 -
Lja1g3219 444 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 444 - -
Lja1g3219 444 CDD RING-HC_RNFT1_like 382 421 - -
Lja1g3219 444 Pfam Zinc finger, C3HC4 type (RING finger) 381 424 - -
Lja1g3219 444 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 13 444 IPR044235 GO:0061630|GO:1904294
Lja1g3219 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 431 IPR013083 -
Lja1g3219 444 SMART ring_2 383 420 IPR001841 -
Lja1g3219 444 MobiDBLite consensus disorder prediction 83 148 - -
Lja1g3219 444 SUPERFAMILY RING/U-box 376 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3219 Lja-Chr1 39774917 39780572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3219 6 444 C3H Transcription Factor Family AT5G01960 69.507 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3219 - K22379 gmx:100818546 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3219 1 39774917 39780572 Lja1g3219 1 39774917 39780572 ECH