Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3215 ATGTCGTCTTGGTCTATTTCGCAGCTTCATGGGGAGGCTGATTCTGTCCATGTAGCAGTGTGTTCTCTTTGCCAAAAGGTCCTATCGCCTGATAATGAGATGACCGGTGATCTTGCGAACCGTGGTGTATGTGGCGATTGTAAATTTTTGTTGCTTGAAGATGTTGGGAATCTTACGGTTGCTCAAAGCTCTCAGAGGAGGGTTAGAGGGAGGTTTAGACATGACAGTTCTGAATCTGTTGAGAACATTTCATCACAACAGCTCCCCTATATGGTTAATACTATGAGGCAAAATCAATCAACTGCGTCTTCAGATGATGATCAATTTGTAGATGGTGACGCCCCAGCTTGGTCGTTGCAGTATGGTAGTACACATACTACCCCTAGTGGGTCTAGCCGTTGGAGGCAGTTTCTCTCTGATAGTGACAGTGAAGGTTTTGATAATTGGAGTTCTGTATATAGGGCTCCCCATGGCGAGACTGATTCTTTCTCTTTCAGTGCTTATGGAGGTGAATCAGATATCTCTGTGGATAGACATAGTTTTGTAGGCACTGGAATTCTTGATTTACCAGATGAGGGAAATCAGTTTGATAGTGACTCTGACATAGATCCAATGCATGCTGGTCTCAGTCAATGGATCTCGGATGATATGGAAGACAATGAGGAAGAAGAGGATGAAGATGGAGAGGAGGTTGAGGATGAGGAGGAGGAGGATGAAGATAGGGAATGGGGACTAGCTGAGGATGATGAAGCTGAAGTCACAGCTCGCCTTCAAATTTTCTTAACATCAGATTCAAGTGAGAGCAGGAGCAACACTAACTGGGAACAGAGGTTTAATTCTACTGAATCTGTGGGAATTTTTACCCAGGTTATCAGGGATACCTGGCAAGCTTTGGAGGATGCTCATTTACCTCATGGTGCAAACTTTGGGGATTATCTTGATACAAGACGCTTCGAAGATCTGCTTGAGCATCTTGCTGAAAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGTGTCTTTCGTGAACAATCTGCCCCGTATAGTAATTGGCAAGGAACATGAGAAGCATGGTGAACTAGTTTGTGCCATTTGCAAGGATGTTTTGGCCCCTGGCACTGAAGTAAATCAGCTTCCTTGCTCTCACCTTTATCACCCCTCTTGCATTTTGCCATGGTTGAGTGCACGAAATTCATGCCCTCTTTGTCGATATGAGCTTCCAACTGATGATAAGGATTATGAGGAGGGAAAGCAGAACAGTGATGCTGGAAATGTGATCCATGTAACGCAGCTTGATGATGATGTGATGGATGATAGTTCCTCCGATGTTTCTGTTGTACTTGAAGTGAGTGAAGAGTATGGTAATACTCTACAACAGAGAGAAGTTGTGAGTGTGAGTTCTTCCAATAATTCTGCTATAAGAGGTGGTAGAGGAAGATGGCTTTTCCTTGCTGCAGCTCCAATTGTTAGTCTAGTTGGCATGGTTCTTGTCATGTGGTTAGGTAGCAATTCACATATTGAAGTGAGTAGACACTTATCTGGGCAAAATCAGCATGCGGTTCATGTTCATGCCTCCCCAAACCAGAGGGAGAGTAGAAGCAAAAGATGGTGGTGGCCTTTCTAA 1626 0.444 MSSWSISQLHGEADSVHVAVCSLCQKVLSPDNEMTGDLANRGVCGDCKFLLLEDVGNLTVAQSSQRRVRGRFRHDSSESVENISSQQLPYMVNTMRQNQSTASSDDDQFVDGDAPAWSLQYGSTHTTPSGSSRWRQFLSDSDSEGFDNWSSVYRAPHGETDSFSFSAYGGESDISVDRHSFVGTGILDLPDEGNQFDSDSDIDPMHAGLSQWISDDMEDNEEEEDEDGEEVEDEEEEDEDREWGLAEDDEAEVTARLQIFLTSDSSESRSNTNWEQRFNSTESVGIFTQVIRDTWQALEDAHLPHGANFGDYLDTRRFEDLLEHLAENDSSRRGAPPAAVSFVNNLPRIVIGKEHEKHGELVCAICKDVLAPGTEVNQLPCSHLYHPSCILPWLSARNSCPLCRYELPTDDKDYEEGKQNSDAGNVIHVTQLDDDVMDDSSSDVSVVLEVSEEYGNTLQQREVVSVSSSNNSAIRGGRGRWLFLAAAPIVSLVGMVLVMWLGSNSHIEVSRHLSGQNQHAVHVHASPNQRESRSKRWWWPF* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3215 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 410 IPR013083 -
Lja1g3215 541 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Lja1g3215 541 MobiDBLite consensus disorder prediction 217 249 - -
Lja1g3215 541 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 299 473 - -
Lja1g3215 541 Pfam Ring finger domain 363 404 IPR001841 -
Lja1g3215 541 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 299 473 - -
Lja1g3215 541 Coils Coil 214 237 - -
Lja1g3215 541 SUPERFAMILY RING/U-box 353 410 - -
Lja1g3215 541 MobiDBLite consensus disorder prediction 217 247 - -
Lja1g3215 541 SMART ring_2 363 403 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3215 Lja-Chr1 39724298 39727111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3215 13 541 C3H Transcription Factor Family AT5G01980 43.165 3.76e-118 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3215 - - pvu:PHAVU_008G078700g 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3215 1 39724298 39727111 Lja1g3215 1 39724298 39727111 ECH